CI01000004_09639469_09656035


Basic Information

Item Value
gene id CI01000004_09639469_09656035
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 9638825 ~ 9656035 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_09639469_09656035.mRNA
GTCTATTGGAAACATAATGGAGTTCACACAAGCTGATAGGCAGCATTTAGACAAGAGCAAACAGGACACAGGCTCTTTAGGAAACACTGATGACGCCCTGAAATATGATAGTGGGCGCGTAGCCCATGACTTCAGCTGCATCCACAGCAAAGATCTGCTCCCTGCTGAAGAGGGAGAGGAAGCAACCAAGCACTTCCTGCAGGAGCTGGTTAACATCTTGCTGGCCTACATCAGTAAATCCTTGAAACGCACCTCAAAAGTTCTAGATTTTCACTATCCACACCAGCTTAAGGAAGGTCTGGAGGGATTCAGCCTGGAGCTTCCTGACCAGCCGGATAATCTGGAGCAGCTACTGGTGGACTGCAGAGACACACTGAAATATGGAGTTAAAACAGTTCATCAGGGCATTTATGAGCCTGAGTTCTTCTCCACTTACAGGTTCACTTATGAAATATCCCCAGTTTTTATACTCATGGAGGAGGTAGTTCTGAGAAAAATGCATTCAATTATTGGATGGCAAGAGGAAGATGGAGATGGCATCTTTTGTCCTGGAGGCACCATGTCCAATCTGTACAGTGTGTTGTTGGCTAGGTTTCATCTCTTTCCGGCAGTGAAGACCCACGGGATGTCTGCGATACCTCGCCTGGTGCTGTTCACCTCTGCGCACAGTCATTATTCAATCAAGAAGTCTGCAGCAGTTCTCGGCATCGGCTCTGAAAATGTTATAGTCGTCAGATGTGATGAAAGGGGGAAGATGATCTCATCAGAACTGAACTCCAGCATTGATGCAGCAAAGTCTAAGGGTCTGGTCCCATTCTATGTCAATGCAACTGCAGGAACCACAGTCTATGGAGCCTTTGACCCTCTGAATGAAATAGCAGACATTTGTGAGCGGCATGGCATATGGATGCACGTGGATGCTGCTTGGGGTGGAGGCTTGCTTCTGTCAAACAAACATCGTGTGAAAATGCAAGGAATTGAAAGAGCCCATTCTGTGACCTGGAACCCGCACAAGATGATGGGCGTCCCACTGCAATGCTCAGCCATTCTAGTGAAGAAAAAGGGCCTCCTGCAGGAATGTAATCAACTCTGTGCTGAGTATCTCTTCCAACCTGACAAGCACTATGACGTGACCTATGACACCGGGGACAAAAGCATTCAGTGCGGACGGCATGTGGACATCTTTAAACTGTGGCTCATGTGGAAGGCGAAGGGCTCCGAGGGTTTTGAAGCACAGGTCAACCACTGCCTAGAAAATGCAGAGTATCTTTACTACAAGCTGAAGAGAAGAACAGATTTTCAGCTTGTCTTCAAAGGAAAAGTGGCTCCAAAAATCAAGACAAAGATGATGGAGGAAGGATTCACAATGATTGGCTATCAACCTCTGGAAGACAAAGTGAATTTCTTCCGTTGTGTTTTCTCCAATCCAGCCACCCAGAGGGAGGATGTGGACTTCCTATTAGATGAAATTGCTCGTCTGGGCTGTGAACTCTAGAGTGCGAAAGACATCTTTTTTGAAAAATCACTCCTTTGTGTCGAGATACATATTTATTTATTTCTTTCCTCATACCACTGATGCCAGTTGTCATTACGTACAGTCCTGCAAGTAGCATTACAGCTTTCTTTTTACGTCTATCTTTGAACATTATTAGCTATTATTAATAATTTATCCTTTGTCACATTCCAAAGGAAATAGATGAAAACTCACTGATTTTCATTAAATCAACATGCTTCTTTAAGAGGCATCCCTTATACAGTATACCATGACTAAATGGCACCTGCTCTTAATCAAGTTAGAGTGAATAGAGTGTATTTTGAGTGAATTTTGAAGGGATATTGGAATAACTCCAGTCTTGCTGCTGTCAGATAGCTCAATTGTTTTGCAGTCTACTAGTGCCTCCTGCTGGTGGGATCTTCTAATACAAGACTAAGAGAACATATAAACTGTGTATTATATATATTTTTTCTATAGGGATGCTCAAATAAGCACATTTTTGGTCTCTGTACATCAGAATTTATTTGCAGCTTGTTGGTTTTTATGCTTTGCTCTGTCCTACATGAAAGGGATTTTATCTGAAAGTTATTTTACACATTATTTATTTGTCTACCACCTGCTGCTTTAGCTCCATAAGTAATAAA

Function

GO:

id name namespace
GO:0016829 lyase activity molecular_function

KEGG:

id description
K01580 E4.1.1.15, gadB, gadA, GAD; glutamate decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_09639469_09656035.mRNA True 2139 mRNA 0.43 12 9638825 9656035

Neighbor

gene id symbol gene type direction distance location
CI01000004_09616639_09622200 RNF31 coding downstream 16165 9616639 ~ 9622660 (-)
CI01000004_09609822_09616099 RNF31 coding downstream 22726 9609575 ~ 9616099 (-)
CI01000004_09592354_09593541 XKR4 coding downstream 45284 9592296 ~ 9593541 (-)
CI01000004_09534571_09550154 XKR4 coding downstream 88407 9534518 ~ 9550418 (-)
CI01000004_09503523_09520686 TGS1 coding downstream 116843 9502058 ~ 9521982 (-)
CI01000004_09703159_09711600 NA coding upstream 45891 9701926 ~ 9711998 (-)
CI01000004_09754664_09774588 CDH6 coding upstream 97432 9753467 ~ 9775073 (-)
CI01000004_09779903_09780536 NA coding upstream 123200 9779235 ~ 9780878 (-)
CI01000004_10271350_10272027 NA coding upstream 615163 10271198 ~ 10272206 (-)
CI01000004_10290550_10295288 CAHZ coding upstream 633828 10289863 ~ 10295357 (-)
G30316 NA non-coding downstream 260349 9377937 ~ 9406921 (-)
G30280 NA non-coding downstream 333201 9305390 ~ 9305624 (-)
G30276 NA non-coding downstream 358895 9279720 ~ 9279930 (-)
G30272 NA non-coding downstream 364073 9274499 ~ 9274752 (-)
G30108 NA non-coding downstream 375990 9262628 ~ 9262835 (-)
G30369 NA non-coding upstream 1889 9657924 ~ 9658522 (-)
G30370 NA non-coding upstream 2713 9658748 ~ 9659060 (-)
G30376 NA non-coding upstream 32856 9688891 ~ 9689116 (-)
G30377 NA non-coding upstream 33239 9689274 ~ 9689506 (-)
G30412 NA non-coding upstream 92311 9748346 ~ 9748560 (-)
G29746 NA other downstream 1280698 8354498 ~ 8358127 (-)
G29656 NA other downstream 1673325 7964364 ~ 7965500 (-)
G29388 NA other downstream 3006918 6631293 ~ 6631907 (-)
CI01000004_06539836_06541252 NA other downstream 3093253 6538904 ~ 6541252 (-)
G31203 NA other upstream 1090402 10746437 ~ 10750641 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 1751430 11406957 ~ 11412907 (-)
G32150 NA other upstream 2120484 11776519 ~ 11780951 (-)
G32207 NA other upstream 2720133 12376168 ~ 12384780 (-)
CI01000004_14543631_14551256 NA other upstream 4894765 14541515 ~ 14551352 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location