CI01000004_09754664_09774588 (CDH6)


Basic Information

Item Value
gene id CI01000004_09754664_09774588
gene name CDH6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 9753467 ~ 9775073 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_09754664_09774588.mRNA
ACTATCCATCTCCCTCCCAGCAGGATGGACTTGTAAATGAACGAGCAGACATTTTGTGCTGGAAACTGTGTCTGTTCACTCTGACACACCATGTAACAAAACCGCTTTAGATCCAGCTGAGTTCCCCCGGCAGGACTGTGTCAAGGGATTTGCCAGGTCACAGAGCTGAGCAAAATGGCTGCCTGAGTTTGACTAATGTGCTCCAGGAGCCCGCTCTCTTTGCCCAGGAGTTTTGGGTGGCTGAAATTCATTAAAGAGCAGCATCCGTAAACTACAATTGTTGGACATAAGAGGGCTCCAACATCTCCCATTTTGCTTTCCTGTTTGTACTGAAATGCCCACATAGAATCATACACACACTTATGTTTATACATACATAGAGCCCCCATGATAATTTCTAGCTCATTGACTTTGACAGTAAATCAATATCCTGTGCTATCTATTGTTACCTAATTCAATTAGACCAATTCATAAAGCAGAACATAATGGAGCTAATGGAAAGCACTATTAGGGGAATAGCTGCACCATTTAAGTCATGCACGGAACTACGAAAGTCAATTCGGCGTCGCAATTGTGCATTTCCATCTGAATCACTGGCCCTCAACCGTCGCTCTTCCCGGATGAAGGGCGATGTTGACCTGATGCATTTTTACACTGACGGAGAGAGGTGCGCCAATGTCGCAAGCAATATTGTAAATCAAAAAACCAGAGACACCCTAAGAGCGGGAAAGATGAGGACTTGGATTGTACTTCTTCTGTGGGCATGTGCACACCAAACTGTGAATGCAGTTGCCCTTTCAAGAGGGCTGGTTCGAAGGAAAACCAAAGAAATTGAAGGACAGCAAGACAAAGAGTTGCTCAAACGTTCAAAGAGAGGATGGATGTGGAAACAGTTTTTTCTGCAAGAGGAATACACAGGAACGGAACACCAATATATTGGCAAGCTTCACTCAGATATGGATAAAGGAGACGGCACAGTGATGTACGTTCTCACAGGTGAAGGTGCAGGGACGATCTTTGTGATAGATGCCAACTCAGGAGATCTGCATGCTACCAGGAGCCTGGACAGAGAGGAGAAACCTTTCTACACGCTCCGAGCTCAGGCTGTCAACAAGAAGACCGGTGTCCCACTGGAGCCAGAGACCGAGTTTATTGTGAAACTACACGACATCAATGACAATGAGCCCAAGTTCGACAAGGAGGTTTATACAGCGTCCGTACCTGAGAGGTCACACACTGGCACCTATGTCACTCAAGTTACTGCCCAGGATGCAGATGATGAAATGTTTGGCTACAGTGCAAAGCTTTCCTACAGCATCAGCCAGGGTCATCCATACTTCTCAGTAGAGCCACATACAGGTATAATTCGGACAGCTTTGGGACCTTCCGATATGGACAGAGAGCAGAGGGAGCACTACCAGGTGGTGATTGAAGCCAAGGACATGGCCGGCCAGAAGGGGGGCTTAACAGGCACCACCACAGTAAACATTAGCCTCACCGATGTCAACGACAACCCCCCTCATTTCACGCAGAAGGAATGCAGGCTATCAGCACAAAGCGGATTTATTGCAGGCAGCACAATATCTGTCACGTTCACCATTTATTACAGTAAAGAGAACACCAAAAGTATGTATCAGTTCAGCGTTCCAGAACTCACAAAGGTAGGATCATCAGTTGGCAGGATTGAGGCTGTGGATGCCGACGTAGGCAGAAATGCAGAGATGGACTATACCATAGTTGGCGGAGAAGGTCTGGATGTGTTTGACATCAGCACTGACAGGAACACCCAAGAAGGCATACTTAGCGTTAAGAAGCCTCTGGACTATGAGAAGAAGAAATCATACCTTCTTCAGATCAAGGTCCAAAACACACATCCAGACCCACACTTTCGGATCCCAGATGCTGACATGACAACTGTCAGTGTCAACATTGAGGATGTGGATGAGCCTCCTCAATTTGAGAAAATCAGATATATTTTGGAGGTGAAAGAGGACGCAGCTGTGGGCACAGTGATAGGATCGGTCAGTGCCGTGGATCCTGACATACGCCACAGTCCGGTCAAGTATTCCATTGATCGGCACACAGATGTGGACAGAGTTTTTGGTGTCTATGCTGGGAATGGATCTATATTCCTGCAGAGGCCTCTGGACCGAGAGGAATTCGCTTGGCACAACATATCAGTGATCGCAACCGAGTTTAGACACTTAGACAACCCCGAGCAGACCAGCCGAGTGCCTGTGTACATCCGCGTACTGGATGTCAACGATAACCCCCCCATGCTGGCATCCTTCTACGAGACCTTCGTCTGTGAAAACGCCAAAGCCGGTCAGAAAATCCAGACAATAAGTGCGGTGGATCCAGATGACCCAGTTGGTGGACATCGCTTCTTGTTCTCCCTAGCACCAGAGAGCTCAGTGCGAGCAAACTTCTCAGTCCGAGATAATGGAGATAACACAGCTGGAATCTTTACACGACGCTCCGGATTTGGCCGAATGCACAAGAGCACCCATCTAGTGGCTGTGGAGATCTCAGATGGAAACTTTCCCATGCAGAGCAGCACAGGCACACTTACAATTCGGGTGTGCACGTGCGACCGAGACGGCAACATGGAGATGTGCAACGCAGAGGCTCTGACCAGCTCTGCAGGGCTCAGCACAGGGGCGCTGGTGGCCATTCTGCTCTGCATCCTCATCCTGCTCTTGATCGTAGTGCTGTTTGCTGCCCTGAAACGTCAGAAGAAGAAAGAGCCACTGATCATCTCCAAGGAGGACGTGAGGGACAATGTCGTCAGCTACAATGATGAGGGTGGCGGCGAGGAGGACACGCAGGCCTTTGACATTGGAGCGCTTCGCCATCCAGAAGCGATGGAGGACAGCAAACTGCGTCGGGACATCCTGCCCTCCGAGTCGCTCTACCCCCCTCCGCCGCTCCACAGGACCATTGTGCCGTCCAGAGAGAACGCAGACGTGCGGGAATTTATCAACCAGCGCATTCAGGAAAATGACGGCAACCCCACGGCTCCTCCTTATGACTCGCTGGCCACCTACGCATACGAAGGTAACGGATCGGTGGCCGAGTCGCTCAGCTCACTGGGGTCTGTGTCCTCGGAGGGGGAGCAGGACTATAACTACCTCAGCGAGTGGGGGCCACGCTTCAGGAAGCTAGCAGACATGTACGGCGGGGAGGACAGCGACTGGGACTCCTAATGGACAGACTGCAGAACAAAACTCATTTGCTGATCTGCCTCTACATGAACACTGGAGTGGCAGAATGAGACAGCCTAATTTCTTTTACAAAGTGCCCTTTTATCCTTCTCTTTCTCCTACAATCAGGCAGCCGGTTTCTCTGTCGTGATTGGCTGTTTTCTCAAAAGAGGAGACGAACTTCACGCTCCGCAAGGAGGACGTATCTGTCTGCGGACTTCTCATCAGAAAGATCATCTGCGGTGACATCTTTCTGCATAATCCCAGATTGTTCTGGAGATGTCTACAGTTTTTCATATCTGTAACCTTCACTGAAAATGGTTTTTTTTGAAAAGCCAAGCATCTGATGCGGAAGCGCTGTTCAAATACTGCTGCAAAGAACAGTTTATCAGTTGACTGTGAGCCTGTGAAACACTTGAAGTGAACTTGAGCAGGTCATTGACTAAAAGGCGAAGGCAGAGTACTTTATGAAAGTAATGAAACCACCGCCAAAATCGAGCCTGTGAATTCACCATCAGACCTCAATGTGTAGCGGGCAGCTCAGAATCAAACAGTTCAACATCATAGGAGTTGTCTAATAACTGGGAGGATTTTTCAAACCCTTACTATTAACAATTTGCATAATTTTACTAATCTACTTACGCGCTCAAGAAAAGATGTGTTGTCCTGTAACCGGAATCAAGACTGATTGTGTGAAACCCATCTAGAAAATGGGTCAGAAGATGTTTCATGGTTGGCACTGGTTTTCATCATCCACGTGAAAAAAAATGCCAGAAGCTTACAATTATCTGCTATGTCATTGGACCTAAATGTGTTTTGCTTCCTTTAGCAGTCTGACAAACGTTTGGTTGAACTCAGAACTGCTTAATATGACTTTCTTCTTGTGAGAGACACACTTCAACACGGTCCCTTAATGACATGCTGCAAACTTTACATTCCATACTATTACCTTTAAACACTGTAGGATGTTTTTTTTCCCTCTCTCACTATTTATCCAGTTGAGACCTTCAGATGAAAAGTCAAACCAAGTAACAGAGAATGAAACATTAATATCTATAGGCCTACATAGAATTACGGTCTATGGTACCAAGGGGTCAAAAGCAAAATTGTTAATCTCAGTGTGAAGCCGCACTTCTCACTTTTCCTCTGACAACCTTCTGCTTTTAATAGCGAGCGTCGAATAACCAGGGAAGTAATAAA

Function

symbol description
cdh6 Predicted to enable cadherin binding activity and calcium ion binding activity. Acts upstream of or within pronephros development and retina morphogenesis in camera-type eye. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of catenin complex. Predicted to be active in adherens junction. Is expressed in several structures, including nervous system; neural crest cell; pronephros; trigeminal placode; and trunk mesenchyme. Orthologous to several human genes including CDH6 (cadherin 6).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06798 CDH6; cadherin 6, type 2, K-cadherin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_09754664_09774588.mRNA True 4403 mRNA 0.47 13 9753467 9775073

Neighbor

gene id symbol gene type direction distance location
CI01000004_09703159_09711600 NA coding downstream 41469 9701926 ~ 9711998 (-)
CI01000004_09639469_09656035 NA coding downstream 97432 9638825 ~ 9656035 (-)
CI01000004_09616639_09622200 RNF31 coding downstream 130807 9616639 ~ 9622660 (-)
CI01000004_09609822_09616099 RNF31 coding downstream 137368 9609575 ~ 9616099 (-)
CI01000004_09592354_09593541 XKR4 coding downstream 159926 9592296 ~ 9593541 (-)
CI01000004_09779903_09780536 NA coding upstream 4162 9779235 ~ 9780878 (-)
CI01000004_10271350_10272027 NA coding upstream 496125 10271198 ~ 10272206 (-)
CI01000004_10290550_10295288 CAHZ coding upstream 514790 10289863 ~ 10295357 (-)
CI01000004_10436514_10438365 NA coding upstream 661426 10436499 ~ 10439459 (-)
CI01000004_10458668_10465442 NA coding upstream 683589 10458662 ~ 10465703 (-)
G30412 NA non-coding downstream 4907 9748346 ~ 9748560 (-)
G30377 NA non-coding downstream 63961 9689274 ~ 9689506 (-)
G30376 NA non-coding downstream 64351 9688891 ~ 9689116 (-)
G30370 NA non-coding downstream 94407 9658748 ~ 9659060 (-)
G30369 NA non-coding downstream 94945 9657924 ~ 9658522 (-)
G30432 NA non-coding upstream 22301 9797374 ~ 9797603 (-)
G30448 NA non-coding upstream 40785 9815858 ~ 9816154 (-)
G30572 NA non-coding upstream 90224 9865297 ~ 9866231 (-)
G30593 NA non-coding upstream 114456 9889529 ~ 9889756 (-)
G30600 NA non-coding upstream 122063 9897136 ~ 9897400 (-)
G30316 NA other downstream 346546 9377937 ~ 9406921 (-)
G29746 NA other downstream 1395340 8354498 ~ 8358127 (-)
G29656 NA other downstream 1787967 7964364 ~ 7965500 (-)
G29388 NA other downstream 3121560 6631293 ~ 6631907 (-)
CI01000004_06539836_06541252 NA other downstream 3207895 6538904 ~ 6541252 (-)
G31203 NA other upstream 971364 10746437 ~ 10750641 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 1632392 11406957 ~ 11412907 (-)
G32150 NA other upstream 2001446 11776519 ~ 11780951 (-)
G32207 NA other upstream 2601095 12376168 ~ 12384780 (-)
CI01000004_14543631_14551256 NA other upstream 4775727 14541515 ~ 14551352 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016443 cdh6 coding NC_007113.7 CM002886.2 28049046 ~ 28102264 (-)