CI01000004_12404227_12411145 (PRPF4BA)


Basic Information

Item Value
gene id CI01000004_12404227_12411145
gene name PRPF4BA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12403532 ~ 12411665 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_12404227_12411145.mRNA
AAACGTGTGGTTTAGGGACCACGTCGTAATTACCATCCACAGCATAAAATGTGATAAAATTTGCTATATTTTTCTCCGTACTGACAAAATTAAACGTTGTTTTCTTGCACGACACTAATTTACAACTTGTTTAAAGTGGTTTAAGTGTGTAGGCAAAATAGCGAACACTAAATTTATGACAATTGTTCGTAGACAAGTCATTTTCTAAGATCCCTTCGTTCTTCTGCGTTTCATACGCACTGCGCATGCGTGGTTTGGAAACGAACCAAACGATTGATTCACCCCAATGAACTTAACCGATGAGTGTGTCGATTCAGTGATTCAGTCAGTTCAGTATTCCCTTTGCGGATAGCCACTGTATAATTTATAGTGAGAGGAAAGTGTTGAGAACCTTTTAAATAAATATTTGGAAGACAAGTTGATTGTTTATTTTAAAGTTAGTAATGGTATCACAGCCAGACTGAATTGTGAATCGACTCTCTTCGTCAAACGACTCAGAAGAACAGCAGGATAAATCAAGATGGCGAACATGGACGCATTAGCCAAAACAATAGCGAAGGATTATGTGAATGATATGGAGAGCTCTGACAGTGTGGATGAAAATGAACATGTATCCGGTGAAGATGGAGCTAGAAAAGCAAACAACATGGACTTTGCTAGGGTGGAAAGACACAAGAAAAAAAAACACAAACATAGAAGCAAGCACAGAAAACATAAATATCCCTCACCAGATGAGAAGGACCACAAACACAAGTACAAACACAAACATAAGCGGAAACACAGAGACTCATTCAATGACAATAAAGACTGTTCTGCTGGCTATGAAGGTGCAATCATCTGTCCAAAGCGATCCAGACTCGACGACCTTGCTGCTTTGGAGGATCTGGAGAAACAGAGGGCTATGATTCAAGCAGAGCTTGATAATGAGCTAATGGAAGGGGCTGTGCAATCAGGTATGGGACTGATATTACAGGGTTATAACTCTGATTCAGAGGAGGATGGTGAGATCCAGGAGGCTGTGCGAAATGGTGAGCAACAGAGAAAAGATCTCAATGAGCATGTAATGGCAAAGGGACATGCTGAAAGATCTCAACAGGATTGCGTAGATGATGAAAAATTTGATTCCTGGCTGGAAGGCAGAAGTATGTCTGATGAGATATCAGTCCCGGCCCATAAATCAGAAATTAGAGTTAGTAAGGCTGGGTTAGATGTTAATATCAGTGAGAGGCCTAGTGGTCCCAGCAAGGCGAGAGAGCGGAGACGATCCCGAAGCATTGAGAAATCCAAAGACGGTGATCAGAGGTCTAAATCTCCTGTGAAGTCCAAGGGATTGCCATCGAGCAATAAAAAATCAACTACGCAGCCTGAAGAGCAAATTGTAGACCACAGATCCTCAGCGAGAAGGAGCAAATCCAGATCTAAAGAAAGAAACATCAACTTGCTAGAAGCTGACAGGGAGAAAGACAAGAAATCAGAGAAAGCACCCTCAAAAGAAGCCTCATCTGGAAAAGAGAATCGATCTCCTAGCAGAAAACAAGGTTCAGAACAGCACAGCCAGTCTGTGCGTCCCAGGGGCCACCGCTCACCTGAAGATTTTCCTGTTGTGCAGAGCACAGACAGGACATCCAGACAGGACAGATCTTCATGCCACAACAGATCCCCTCCAAGGAGAGGGCGATCTCGGTCGTTTGAGAGGAGACGGAGAGAAGAAGAGCGCCAGAGACTCCCAAATGACAGGATGCGATCTCGTGATGAGGTAGGGGGCCATAGAGAGGAGAGTCCCTGTCTGAGCTCCAGACGAAGTAGCGTTAAAACTGCATTAATACTGTGTGGATCTAGGGAGCGTGACAGGATGGAGCGCCGACAGCAGGGGCGTTCGGGATCCCAGGAAAGGTGGAGGAGAAGGAGCAGAGAAAGAGAAGACATGTTTAAGGGCAGTCTGTCTGAAGGGATGAAGGCTGAGCAGGAGGACTCAGATGATGAAGTGATGGAGGACTATGATGTTGATGAAGAGGACGAGGAGGCTTTGATAGAGCAGAGGAGACTTCAACGCCTAGCCATCATGCAGAAATATAAGCCAGTGAATGAGGACAGTAACATGTCAGGACTCTCAGATCATGGCAGTCCTCAGAGTAGCTCTCGCAGCCGATCGCCGTCACCTGATGACATCCTTGAGCGTGTGGCTGCTGATGTCAAAGCCTATGAGCAAGAGAACCTGGACACATTTGAGGATAATGTGAAGGCGAAGCATAGTCTTGTCTCTCAAGAGAAAACCGGTCCTAATCTGAAAAAGCCACCAGCCCCTGATATGTTCACAGAGTCAGATGACATGTTCACTGCTTATTTTGACGTGAGTAGTCAAGTTCCTGCTTTCTATTGTATAGGTCAGTGGCTTTGCAAGCCCCTAAATTTGATTGAATTTGTCCATGTAAGGGGATCTCTACAGAGTGCCAGGTTACGAGCCGCAGGCATTGGAAAGGACTTTAAGGAGAACCCAAGTCTCAGAGATAACTGGACAGATGCAGAGGGCTATTACCGTGTGAACATCGGCGAGGTGTTGGACAAACGGTACGGGGTGTATGGCTACACTGGACAGGGTGTCTTTAGTAATGTGATCCGAGCCAGAGACTTGGCCCGAGCCAATCAGGAAGTGGCGGTGAAAATAATACGCAACAATGAGATGATGCAAAAGACAGGCCTCAAAGAGCTGGAGTTTCTGAAAAAACTGAACGACGCCGATGCAGATGATAAGTTCCACTGCTTGCGTCTGTTTAGACACTTTTATCACAAGCAGCATCTGTGTCTGGTGTTCGAACCGCTTAGCATGAACCTGCGGGAGGTGTTGAGGAAGTATGGCAAGGATGTTGGGCTACACATCAAGGCTGTGCGCTCGTACAGCCAACAGCTATTCCTGGCTCTCAAACTGCTCAAACGCTGCAACATTCTGCATGCTGACATCAAACCCGACAACATTCTGGTTAACGAATCAAAAACCATCCTCAAGTTGTGCGACTTTGGCTCAGCGTCACATGTTGCTGACAATGACATAACACCATATCTCGTCAGCCGTTTCTACAGGGCACCTGAGATCGTCATCGGAAAATCATATGATTATGGAATCGATATGTGGTCTGTAGGCTGCACTCTCTATGAACTATACACAGGGAAAATTCTTTTCCCTGGAAAGACAAATAACCACATGCTAAAACTCGCCATGGACCTGAAAGGAAAATTGCCTAATAAAATGATCAGGAAGGGTCTGTTCAAGGACCAGCACTTTGACCAAAACTTGAACTTTTTGTATACCGAGGTTGATAAGGTCACCGAGAGGGAAAAGGTCACAGTCATGAGCACCATTAACCCAACTAAGGACCTGTCGATTGACATGGTGGGTCGCCAGGCACTACCAGAGGACCAGCGAAAGAAGGTCTTCCAGCTCAAAGATCTGTTGGACCAGATCCTGATGCTGGACCCCGCCAAGCGGATCACCATCAACCAGGCATTACAGCATCCTTTCATCCAGGAGAGGATATGATCAGCAGCATACCTCAGAGACTCATGATGGTTTTGTATCTACAGATATGACTCAGAAAACAAAAGACATTTGCATATTTTATTGCCATGCTATTTTATTTTTATTTCTGATTCGTAGTAATTATCAGAGCAGGACACACTCAAGATTTACTTTGATTATTATTATTATTATTTTAGATGACCTACAATGCACCCCATAAAATGTAAAGAGAAAATTCTTTCAAGAATCTATATTGTTCAGATTGCATGTTTCATACACAGCTTCTTGTAGCAGCTAAAATGATATTGTCAGATATATTTGATATTACGATCAAGGTTCAGAATGTAAGAAGAATGAAAGTTCGTACACCGTATATTTTATGTAAAATACTAGAATTTGATGTAAACCAAATATTAAAACCACCAAGGACTGTTTAGAGTGTGACATGAGTCAGGCCAGCATAAATGCTGTCTATATCCACCCTCCCTTAGGTGTGAGAGTGAGAACGCAACCTGGCGTGCAGGCCCACGGCATGCCCCTTGCCCTAGGTGTGTTTCTGCTGAATCTGAGGTCTTGGGTCCTGCTTGACCTGGTCTGCAGGGAAAGCCTCCTCTGTAAAGGCAGGTTGTACACCTCTATTGGTACACTGAAGGTAAGCTAACCCTTCCAAAACAAACGGCATCGTCATTTTGCGTTCTTTTCAAGCCCAAAATAAA

Function

symbol description
prpf4ba Predicted to enable ATP binding activity; protein serine kinase activity; and protein threonine kinase activity. Predicted to be involved in protein phosphorylation. Predicted to act upstream of or within mRNA cis splicing, via spliceosome and phosphorylation. Predicted to be active in nucleus. Orthologous to human PRPF4B (pre-mRNA processing factor 4B).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_12404227_12411145.mRNA True 4230 mRNA 0.45 15 12403532 12411665

Neighbor

gene id symbol gene type direction distance location
CI01000004_12364142_12368537 BFSP2 coding downstream 34860 12364035 ~ 12368672 (-)
CI01000004_12345221_12345884 NA coding downstream 57223 12344810 ~ 12346309 (-)
CI01000004_12315924_12323953 NRBP2, NRBP2A coding downstream 79579 12314745 ~ 12323953 (-)
CI01000004_12279303_12308271 PUF60, PUF60A coding downstream 95261 12278894 ~ 12308271 (-)
CI01000004_12239182_12271760 FASTK coding downstream 131313 12238215 ~ 12272219 (-)
CI01000004_12550061_12550882 NA coding upstream 138221 12549886 ~ 12550931 (-)
CI01000004_12574165_12577698 NA coding upstream 162420 12574085 ~ 12580179 (-)
CI01000004_12748162_12752913 NA coding upstream 336274 12747939 ~ 12753275 (-)
CI01000004_12781663_12809789 NA coding upstream 369860 12781525 ~ 12809789 (-)
CI01000004_12823734_12925962 B4GALT2 coding upstream 412069 12823734 ~ 12925962 (-)
G32261 NA non-coding downstream 51081 12352019 ~ 12352451 (-)
G32200 NA non-coding downstream 116752 12282650 ~ 12286780 (-)
G32258 NA non-coding downstream 206404 12196373 ~ 12197128 (-)
G32177 NA non-coding downstream 223708 12177943 ~ 12179824 (-)
G32264 NA non-coding upstream 7767 12419432 ~ 12419839 (-)
G32266 NA non-coding upstream 11924 12423589 ~ 12423850 (-)
G32267 NA non-coding upstream 12496 12424161 ~ 12424469 (-)
G32276 NA non-coding upstream 47935 12459600 ~ 12459828 (-)
G32278 NA non-coding upstream 48813 12460478 ~ 12462341 (-)
G32207 NA other downstream 18752 12376168 ~ 12384780 (-)
G32150 NA other downstream 622581 11776519 ~ 11780951 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other downstream 990625 11406957 ~ 11412907 (-)
G31203 NA other downstream 1652891 10746437 ~ 10750641 (-)
G30316 NA other downstream 2996611 9377937 ~ 9406921 (-)
CI01000004_14543631_14551256 NA other upstream 2139135 14541515 ~ 14551352 (-)
G33746 NA other upstream 2157128 14568793 ~ 14569264 (-)
G33750 NA other upstream 2166793 14578458 ~ 14579001 (-)
G33755 NA other upstream 2169741 14581406 ~ 14581873 (-)
G33756 NA other upstream 2173506 14585171 ~ 14585745 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00019745 prpf4b,LOC106597319,LOC107670278 coding CM030124.1 CM030124.1 42508602 ~ 42527208 (+)