CI01000004_12364142_12368537 (BFSP2)


Basic Information

Item Value
gene id CI01000004_12364142_12368537
gene name BFSP2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12364035 ~ 12368672 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_12364142_12368537.mRNA
AGGCCACCATAAAGAGGCATGCGCTGGTAGCTGTTGCCGTTTAGCTGAGGGGAGGTCAGTGGATATTTACTCTTGCATTGTGGTCATGTCTATGGACTACTAGTAGCCTGTCACTTAAAAAGCATCAGGACAGGAATGCCTCTGCCACGACGCCGATCCTCCTTCCTGGGCCAGGCTGCTGCGGAGCGGCCGGGCAGTGTGGGCCGCATGAGTGGAGCAGGGACCTCTGCGCCTCGGGGAGTGTTTGTAGGCATGGCTCTCACTGGAGGTACCAGCAGCCTGGGTGCACGCGTGTCCCGCAGAGCTCTGGGCATGAGCAGCGTGTTTCTGCAGAGCCTTAGAAGCAACACCTTTCCTGTGGTGACCCAGCCCAGGGATCGAAGCCACCAGCATAGCTTCGACAGCCTTAACACGTGCCTGCTGGAGTATCGTGATAAAGTTCACGCTCTGGAGCAACTCAACCAACAACTGGAGGAACAGATCAGACACTGCTTGGAAAGGAAAGCCGTCAGCGCTGGGACATGGACTGGCTTAAAACAAGACTGGGAGGATGTTTATTTACAGGTCAGTGACAATATCCTGGACAATGCTCGACTTATGCTTCAGACTGAGAATGTTCAAGCCACTGCAGAGGACTTCAAAGACAGGTACGAGAATGAGCAGCCTTTTCGTAAAGCAGTGGAGGAGGAGATTAACTCTCTGTACAAAGTCATCGATGATGCAAACCTGACTAGGATGGACCTGGAGAATGAGATTGACAGCATGAAGAATGAGCTGATGAATCTGGAGCAGAGTCACATGGAGGATGTTAGAGTGCTCTATAAGCAGATATCCGGGCATGAGGTTGATGAGCCGGATGCTCCCACTGAGACCAGCCTGGACCAGATTCTGGCTTTCATCCGTTCCCACTGGGAGAAGGTCATTGAGAAGAATCGTGCTGAGACTGATGCTTACCTCGAGTGCAAGCAGGCTGAGAGTGTGAACAGTAAGCTGAGTCGAGAAGAAGAGGAGCTTGAGAGTCTGAAGACAGAATGCAATGATGCCGGGTGCAAGATTCAGAGTCTGCAGGCCGAGACTGAGTCTATTAGAGCTCTGAAACGAGGCCTGGAGAATGCCCTCAAAGATGCTAAACACTGGCATGACATTGAGCTCCAAAATCTGGGCTCTGTTATCGGAAAGCTGGAGGCTGAGCTCTCAGACGTCCGTGGGGACATTGAGCAGCAGCGTCGGGACTATGAAACCTTGCTCAACAACAGGAAGAAGCTGGAGCTGGAGATCGGAACATATCACGGAATCCTGGACGGAGAGGAGAGCAGATTCTACTCCACAACGTTCCCCGGTGGTTCTTCAGTACCTGAGGGACGAATTGATCCCACATCTTCCACATCTGAAACACAAAGCTGTCCACAGACGGAAGGTTCTAACGCTCCTGATGCCCCAGAAGAAGGAAAGAATGAATGAAATATTTCATTAATCTTTGCAAAAATCTTGATTTTCATTTATTTCTCCTTACTTGTATTTTTCAGCATCTATAGACTACATGATTGCTGTGCAGGTTAAGAAATAAA

Function

symbol description
bfsp2 Predicted to enable structural molecule activity. Predicted to act upstream of or within intermediate filament cytoskeleton organization. Predicted to be located in intermediate filament. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract and cataract 12 multiple types. Orthologous to human BFSP2 (beaded filament structural protein 2).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0045104 intermediate filament cytoskeleton organization biological_process

KEGG:

id description
K10379 BFSP2; phakinin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_12364142_12368537.mRNA True 1568 mRNA 0.50 8 12364035 12368672

Neighbor

gene id symbol gene type direction distance location
CI01000004_12345221_12345884 NA coding downstream 17726 12344810 ~ 12346309 (-)
CI01000004_12315924_12323953 NRBP2, NRBP2A coding downstream 40082 12314745 ~ 12323953 (-)
CI01000004_12279303_12308271 PUF60, PUF60A coding downstream 55764 12278894 ~ 12308271 (-)
CI01000004_12239182_12271760 FASTK coding downstream 91816 12238215 ~ 12272219 (-)
CI01000004_12228586_12231682 NA coding downstream 131973 12228517 ~ 12232062 (-)
CI01000004_12404227_12411145 PRPF4BA coding upstream 34860 12403532 ~ 12411665 (-)
CI01000004_12550061_12550882 NA coding upstream 181214 12549886 ~ 12550931 (-)
CI01000004_12574165_12577698 NA coding upstream 205413 12574085 ~ 12580179 (-)
CI01000004_12748162_12752913 NA coding upstream 379267 12747939 ~ 12753275 (-)
CI01000004_12781663_12809789 NA coding upstream 412853 12781525 ~ 12809789 (-)
G32261 NA non-coding downstream 11584 12352019 ~ 12352451 (-)
G32200 NA non-coding downstream 77255 12282650 ~ 12286780 (-)
G32258 NA non-coding downstream 166907 12196373 ~ 12197128 (-)
G32177 NA non-coding downstream 184211 12177943 ~ 12179824 (-)
G32264 NA non-coding upstream 50760 12419432 ~ 12419839 (-)
G32266 NA non-coding upstream 54917 12423589 ~ 12423850 (-)
G32267 NA non-coding upstream 55489 12424161 ~ 12424469 (-)
G32276 NA non-coding upstream 90928 12459600 ~ 12459828 (-)
G32278 NA non-coding upstream 91806 12460478 ~ 12462341 (-)
G32150 NA other downstream 583084 11776519 ~ 11780951 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other downstream 951128 11406957 ~ 11412907 (-)
G31203 NA other downstream 1613394 10746437 ~ 10750641 (-)
G30316 NA other downstream 2957114 9377937 ~ 9406921 (-)
G29746 NA other downstream 4005908 8354498 ~ 8358127 (-)
G32207 NA other upstream 7496 12376168 ~ 12384780 (-)
CI01000004_14543631_14551256 NA other upstream 2182128 14541515 ~ 14551352 (-)
G33746 NA other upstream 2200121 14568793 ~ 14569264 (-)
G33750 NA other upstream 2209786 14578458 ~ 14579001 (-)
G33755 NA other upstream 2212734 14581406 ~ 14581873 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016531 bfsp2 coding NC_007113.7 CM002886.2 32761130 ~ 32769759 (-)