Gene
RNA
| Item | Value |
|---|---|
| gene id | G32798 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 12965870 ~ 12966103 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU37195 | True | 234 | lncRNA | 0.30 | 1 | 12965870 | 12966103 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_12952019_12956814 | ATP6V0B | coding | downstream | 9056 | 12951759 ~ 12956814 (-) |
| CI01000004_12823734_12925962 | B4GALT2 | coding | downstream | 39908 | 12823734 ~ 12925962 (-) |
| CI01000004_12781663_12809789 | NA | coding | downstream | 156081 | 12781525 ~ 12809789 (-) |
| CI01000004_12748162_12752913 | NA | coding | downstream | 212595 | 12747939 ~ 12753275 (-) |
| CI01000004_12574165_12577698 | NA | coding | downstream | 385691 | 12574085 ~ 12580179 (-) |
| CI01000004_13086552_13088659 | NA | coding | upstream | 118721 | 13084824 ~ 13088898 (-) |
| CI01000004_13089864_13091636 | NA | coding | upstream | 122480 | 13088583 ~ 13091669 (-) |
| CI01000004_13094468_13114401 | PTCH2 | coding | upstream | 127483 | 13093586 ~ 13114998 (-) |
| CI01000004_13127356_13168751 | EI2BG, EIF2B3 | coding | upstream | 161253 | 13127356 ~ 13168751 (-) |
| CI01000004_13208157_13210917 | CENPL | coding | upstream | 241778 | 13207881 ~ 13210917 (-) |
| G32720 | NA | non-coding | downstream | 44336 | 12913214 ~ 12921534 (-) |
| G32701 | NA | non-coding | downstream | 184380 | 12775782 ~ 12781490 (-) |
| G32707 | NA | non-coding | downstream | 252694 | 12707058 ~ 12713176 (-) |
| G32606 | NA | non-coding | downstream | 310043 | 12600800 ~ 12655827 (-) |
| G32810 | NA | non-coding | upstream | 16353 | 12982456 ~ 12982781 (-) |
| G32822 | NA | non-coding | upstream | 33039 | 12999142 ~ 13000643 (-) |
| G32823 | NA | non-coding | upstream | 36128 | 13002231 ~ 13002542 (-) |
| G32710 | NA | non-coding | upstream | 79716 | 13045819 ~ 13046163 (-) |
| G32715 | NA | non-coding | upstream | 80159 | 13046262 ~ 13046911 (-) |
| G32207 | NA | other | downstream | 581090 | 12376168 ~ 12384780 (-) |
| G32150 | NA | other | downstream | 1184919 | 11776519 ~ 11780951 (-) |
| CI01000004_11407198_11412220 | ADCYAP1B, ADCYAP1 | other | downstream | 1552963 | 11406957 ~ 11412907 (-) |
| G31203 | NA | other | downstream | 2215229 | 10746437 ~ 10750641 (-) |
| G30316 | NA | other | downstream | 3558949 | 9377937 ~ 9406921 (-) |
| CI01000004_14543631_14551256 | NA | other | upstream | 1584697 | 14541515 ~ 14551352 (-) |
| G33746 | NA | other | upstream | 1602690 | 14568793 ~ 14569264 (-) |
| G33750 | NA | other | upstream | 1612355 | 14578458 ~ 14579001 (-) |
| G33755 | NA | other | upstream | 1615303 | 14581406 ~ 14581873 (-) |
| G33756 | NA | other | upstream | 1619068 | 14585171 ~ 14585745 (-) |
