XLOC_016733 (trim55a)


Basic Information

Item Value
gene id XLOC_016733
gene name trim55a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42114310 ~ 42128714 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032822
GTACTTTTTCTAAAAACAGACCGGACACTACACGAGTGCGTGGAGGAAGGTGACGACGCGTTTTACCGTTCATGTTGTATAAGTTCCACAGCACGGGAAACAGCATTTCTTTAATAAGAGAATAAAAACAATCAAGACCCAACACACGCAAAAGTGTGTTCAGCAAACGCGCGCGCCCCGGGTGATGAGCGTGACTTTGGATTACTGCCTCAGTAGATCGCGCGACACCATGGAAAGTTTGGAGAGGCAGCTCATTTGCCCCATTTGCCTTGAGATCTTCACCAAACCGGTGGTCATTTTACCGTGCCAGCACAACCTCTGCCGCAAATGTGCCAACGACATCTTTCAGGCCTCAAACCCCTACCTACCCACACGGGGAGGCTCTTCACTGGGCTCCGGCGGCCGGTTCCGCTGTCCCTCCTGCAGACATGAAGTAGTTCTGGACAGGCACGGGGTCTATGGCCTGCAGAGGAACCTGCTGGTGGAGAATATCATAGACATGTACAAACAGGAGTCCAGCAGCAGTAAACCTGAGCCACAAGTGAAGGAAGAGGTGCTGATGTGCGAAGAGCATCAGGACGAGAGGATTAATATCTACTGCGTGACGTGCTCTGTTCCTACTTGTTCGCTATGCAAAGTGTTCGGGAGTCATCAGACCTGTGAGGTCGCTCCACTTAAATCTGTCTATGAGTCCCAGAAAACAGAGCTGTCCGATGGCGTTGGCCTGTTAGTTGGAAACAATGACAGAATTCAGGGAATTATCAGTCAGCTAGAGGAAACCTGCAGATCTGTGGAGgagAACGGTCGCAGGCAGAAGTCTCGTGTTTGCGAGTGGTTTGATCGCCTGTATGCTCTTCTGGAAGAACGCAGAGGAGATCTAACGCTGAAGATCACAGCAGAACAGCAGGAGAAGCTGGATTATATCAGTGGCCTACAGCGCAAGTACAGAGAGCATCTGGATAACTCAGCTAAACTAGTGGAGACAGGAATTCAGACAATGGAGGAATCTGAAATGGCTATCTTCCTGCAGAACACGAAGCCTCTGCTACAACAGATTGCAGAAAGCCGGAATGTGTCTCACTTAGAGAAGGTTGAGCGTGGATATGAAAACATGGATCATTTCTCTGCAAACTTCCAGTCGGAGCGAAGAGCAATCCTCAGTATAGACTTTATCAAGGATGGGGACGACAatgatgaggatgaggatgatgatgaagaaatAACCGTAAATCCTGAGGCATCTTCAGGAGCCGCACCTGCCCCAGTTCAGCAGAGACAAACCCCCGTGCCAAATCCTTCACCAATGGCAGCTGACTCTGTCCAAATGTCATTAAAGCCCAGCCAATCAGCAAACACAAATCCGACAGAGAACACGCCCATAGTTACACCCACTCCAGACTCCACTCACATCCCTTCCGCAGATGCACAAGCACAGGTAACATCCGGTCCCGGCCAGACATCTGATGATGGACAACGCCACGTTTTCTCTTTCTCTTGGTTAAATATGCCAAAGTAACCCAAGACTAAACCTGATAAACCTGCAACACTACAGTTAACCTTCCAGAAAAGCCTGATGTACATCAAAATGAATATTGTATTTCTTTTCCaacaataattatacattaaatagctagataagaataaaaaaaacatttctttctgAAGTAGAGGACTAAAGTgcaaaataaatgatgaataagTGAA

Function

symbol description
trim55a Predicted to enable ubiquitin protein ligase activity. Involved in heart contraction. Predicted to be active in cytoplasm. Is expressed in adaxial cell; gonad; heart; musculature system; and somite. Orthologous to human TRIM55 (tripartite motif containing 55).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-50 Predicted to enable ubiquitin protein ligase activity. Involved in heart contraction. Predicted to be active in cytoplasm. Is expressed in adaxial cell; gonad; heart; musculature system; and somite. Orthologous to human TRIM55 (tripartite motif containing 55).

Ensembl:

ensembl_id ENSDARG00000029596

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032822 True 1704 mRNA 0.47 10 42114310 42128714

Neighbor

gene id symbol gene type direction distance location
XLOC_016732 adhfe1 coding downstream 4735 42095487 ~ 42109575 (-)
XLOC_016731 si:dkey-97a13.12 coding downstream 22384 42088456 ~ 42091926 (-)
XLOC_016730 cspp1b coding downstream 42752 42068158 ~ 42071558 (-)
XLOC_016729 cspp1b coding downstream 49241 42039036 ~ 42065069 (-)
XLOC_016728 gbp1 coding downstream 79003 42020915 ~ 42035307 (-)
XLOC_016734 slc39a6 coding upstream 27572 42156286 ~ 42173984 (-)
XLOC_016735 apom coding upstream 100027 42228741 ~ 42234561 (-)
XLOC_016736 ftr07 coding upstream 184175 42312889 ~ 42314218 (-)
XLOC_016737 si:dkey-7l6.3 coding upstream 225929 42354643 ~ 42360414 (-)
XLOC_016738 gtpbp4 coding upstream 232659 42361373 ~ 42375275 (-)
XLOC_016727 BX663525.2 non-coding downstream 130554 41972537 ~ 41983756 (-)
XLOC_016725 BX663525.1 non-coding downstream 167414 41945975 ~ 41946896 (-)
XLOC_016722 NA non-coding downstream 342269 41751840 ~ 41772041 (-)
XLOC_016718 NA non-coding downstream 595970 41504477 ~ 41518340 (-)
XLOC_016717 BX890557.1 non-coding downstream 692588 41421606 ~ 41421722 (-)
XLOC_016743 NA non-coding upstream 467210 42595924 ~ 42597593 (-)
XLOC_016745 NA non-coding upstream 537188 42665902 ~ 42748662 (-)
XLOC_016746 NA non-coding upstream 549309 42678023 ~ 42678382 (-)
XLOC_016747 NA non-coding upstream 579955 42708669 ~ 42710429 (-)
XLOC_016748 NA non-coding upstream 585085 42713799 ~ 42717726 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000098_02956318_02961605 TRIM55A coding CI01000098 null 2956318 ~ 2962369 (-)