XLOC_016737 (si:dkey-7l6.3)


Basic Information

Item Value
gene id XLOC_016737
gene name si:dkey-7l6.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42354643 ~ 42360414 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032830
CCCACCGGAAACGACATCAGCCTCCACTAACAACAGTCTCCAAACGTTTACAAGGTTTTGGACCAAAAATCAAAACAACGCAGgcggccacaacgcagaggaCCGTGTAGGATGGCGAATTACCGGGCGTTTCACACCCAACTCGCGACCATCATGGAGACGCTGACTCGCGCCGCGGTGGCGGAAATCTGCGAGCTCGTGGACGACGGATACGCGGTTTTACACATCGAGATCTCGCGCCATCAGAAGGAGAACGAGGAGCTCCGGCGGAAACTGCAGCTCATTGAGTCGATCGTGGCGGCACGGGGGTACAGCGAGGAGAGCTCGGTAACGCGGGACAACAGTGCCCGAGAACCGCTGCTAGACCGGAAAACACCCGGAGGAGGAGAGTCGAGCAGCCGGGCCACAGCACTGGAGGTGCGGGAGTTTCGTGAGGAAGGAGATTTGATCCAAATGCAAATCAAAGAGGAAGGCTTCGAGCATCCGCCACTGGAAGatgaggatgaggatgaagACGAAGGTGAAAGCGTCTCCGCAGCGACTCACGACTCTCCTAAAGCGGATGTAGTTGAGTTGTCAGGACaagactcacacacactctcgcaCTCTCCGGACCAAGACAcccactctcacacactcacgtTTGCAGACACTCACTCTGGCGCCGACGAGTCTCAGCACTCCAGCATTGATCTGACTGTTTCTGATAATGCGTCCTTCTCCCTTTCTCAGACCGCTGCATCAGACGCTCGCGCCGCTCACCTCCACCGAGTGTTTCAGGAGGACCTGTGCATGAAGACGGACCTGGATCCGGTTTCTGATTGGGCCACACACTCAGTACGTAACACTCTGGCACACTTACAGAACTCTCCACAGGGAGTCGGCGGCTCAGACTCCATTGTGCCCCATAATTCTCCGTTGTTTGCTGCGCAGAGGCTGGTTGCGCTTGGGAATGTGTCTGGGCTGGGGCTCTACGGGCGTCTGGGCGCTTTACGCGGATGCGGGACCGGCAAGCGGCATTTCATCTGCTCAatctgtgggaagagtttcaccaCGTCTCAGAGTTTGGACACACACATGCGCATACACACAGGCGAGCGGCCCTATCGATGCGAGCAGTGCGGGAAACGCTTCACACAGTCCGGACACCTCACGGCGCACCAGACCGTCCACACCGGGGAACGACCGTACGAGTGCAGTCGCTGCGGGAAACGCTTCGCCGGGAAACAGTACCTGCGCATTCACACTAAAAAACACCATCCCGACCTGCACGCGCTCGCTCAACTACAGTCTCAAACGCAGCAGGACACACTACCCTCAGGGAGTTTGTAGATATTTCTAGATTCTAGAGGTGTCTTGAGAAGAGTTTCAAATAAAGACCTTCATATTCCAGAGTGTCATTTTGTAGCAGGACTTTTCCCAGGTCtttattttgatcaaattaaGCAGTGAGATGCATTGAAACACACTGAAGACAGCAGGCGTGCAATAGCAGGATGATGTGAGCACATGAGGACACTGATTTGTTAAGCGTGAAATGTGATCCTGGACCACAGAAGTAGACTCgtgatgcatttaggcatggacCAGAATAAGGCCGTACTTAAACCAAGTACAATTGTcctgaaccaggccaaagcacgcttgtcacccctcccgtctccccagtctacccgcactcacattacattcgggcacGCTTATATCACCGATGATGCGCagttcagtaagcgctttcgctcagcacagcggagatttctctagttatattgttttagttgtttgatatgcagtgacgcGCAGTTATATATTccgctgaacagatccgccacttttgaagctcataaacaatcataaagtcctcgtgctgcaggaattaggaggtttgctgaaggtgcagctgtcgtgcagtaaggggttttcgtctttaataatctacgacagtttgtgttcattgaacagaaagaatgattaataaatccatattaaacaatcccctaaaa
>TCONS_00032831
CAGTGTCGCTTTTTTACTACAGAGAAATCATCTGTCACCGTATTTTAAGTGTGTACACTAACGAGTACGCTTGACCGCTGTATCTACaggcggccacaacgcagaggaCCGTGTAGGATGGCGAATTACCGGGCGTTTCACACCCAACTCGCGACCATCATGGAGACGCTGACTCGCGCCGCGGTGGCGGAAATCTGCGAGCTCGTGGACGACGGATACGCGGTTTTACACATCGAGATCTCGCGCCATCAGAAGGAGAACGAGGAGCTCCGGCGGAAACTGCAGCTCATTGAGTCGATCGTGGCGGCACGGGGGTACAGCGAGGAGAGCTCGGTAACGCGGGACAACAGTGCCCGAGAACCGCTGCTAGACCGGAAAACACCCGGAGGAGGAGAGTCGAGCAGCCGGGCCACAGCACTGGAGGTGCGGGAGTTTCGTGAGGAAGGAGATTTGATCCAAATGCAAATCAAAGAGGAAGGCTTCGAGCATCCGCCACTGGAAGatgaggatgaggatgaagACGAAGGTGAAAGCGTCTCCGCAGCGACTCACGACTCTCCTAAAGCGGATGTAGTTGAGTTGTCAGGACaagactcacacacactctcgcaCTCTCCGGACCAAGACAcccactctcacacactcacgtTTGCAGACACTCACTCTGGCGCCGACGAGTCTCAGCACTCCAGCATTGATCTGACTGTTTCTGATAATGCGTCCTTCTCCCTTTCTCAGACCGCTGCATCAGACGCTCGCGCCGCTCACCTCCACCGAGTGTTTCAGGAGGACCTGTGCATGAAGACGGACCTGGATCCGGTTTCTGATTGGGCCACACACTCAGTACGTAACACTCTGGCACACTTACAGAACTCTCCACAGGGAGTCGGCGG

Function

symbol description
si:dkey-7l6.3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-586 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

Ensembl:

ensembl_id ENSDARG00000094514

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032830 False 2003 mRNA 0.52 4 42354643 42360414
TCONS_00032831 True 893 mRNA 0.56 3 42355759 42360329

Neighbor

gene id symbol gene type direction distance location
XLOC_016736 ftr07 coding downstream 40425 42312889 ~ 42314218 (-)
XLOC_016735 apom coding downstream 120082 42228741 ~ 42234561 (-)
XLOC_016734 slc39a6 coding downstream 180659 42156286 ~ 42173984 (-)
XLOC_016733 trim55a coding downstream 225929 42114310 ~ 42128714 (-)
XLOC_016732 adhfe1 coding downstream 245068 42095487 ~ 42109575 (-)
XLOC_016738 gtpbp4 coding upstream 959 42361373 ~ 42375275 (-)
XLOC_016739 slco5a1a coding upstream 22058 42382472 ~ 42396592 (-)
XLOC_016740 slco5a1a coding upstream 38788 42399202 ~ 42415902 (-)
XLOC_016741 esyt2a coding upstream 59427 42419841 ~ 42492445 (-)
XLOC_016742 dip2cb coding upstream 136084 42496498 ~ 42558549 (-)
XLOC_016727 BX663525.2 non-coding downstream 370887 41972537 ~ 41983756 (-)
XLOC_016725 BX663525.1 non-coding downstream 407747 41945975 ~ 41946896 (-)
XLOC_016722 NA non-coding downstream 582602 41751840 ~ 41772041 (-)
XLOC_016718 NA non-coding downstream 836303 41504477 ~ 41518340 (-)
XLOC_016717 BX890557.1 non-coding downstream 932921 41421606 ~ 41421722 (-)
XLOC_016743 NA non-coding upstream 235510 42595924 ~ 42597593 (-)
XLOC_016745 NA non-coding upstream 305488 42665902 ~ 42748662 (-)
XLOC_016746 NA non-coding upstream 317609 42678023 ~ 42678382 (-)
XLOC_016747 NA non-coding upstream 348255 42708669 ~ 42710429 (-)
XLOC_016748 NA non-coding upstream 353385 42713799 ~ 42717726 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000098_03074777_03078830 NA coding CI01000098 null 3074571 ~ 3078830 (-)