XLOC_016718


Basic Information

Item Value
gene id XLOC_016718
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 41504477 ~ 41518340 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033393
GTATTTAGAATCAGTAAACCCCGTTAGCCAAGTTCAGGGATTATAGATTCTAGTTTTATAGAGATATAGATTTGTTTACCAAAGCCTGCACAACTTTCAAGCTTTTAAACTTTACAAAAAGAATGCAAATGTTACATATCACGCCGAAATTTTCACTGCATGCAAACAACCTTTTTTATTGATGTAAGGTAAGAACCAGGAGTCTTGGGCGCTGGACTTGGAGCTGGAAGACTTGAAGCTCTTGTGTCCTGACGGGAGTGAAGCGAACCTGTTCCAGCATGAGAGCTGCCACCTGGCTGTAGTGCCAACCAATGCCGTGGTAGTGCGTTTGGAGGACAAATGCCGCGTTTACAAGTTCTTGGAACGTGTGCAGAACGCATTTGGTAACACCACTGAAGGATTTTCTCTGTTCAGCTCAGTGAATTATGGGCAGCCTGATGTGCTGTTCAGCGATTCCACCAAAAAGTTGCTCCGCGTCATGGGGACCTACACTTCCTGGCTGGGACCCAGTTATACCACCATACTGAGGGCTTTTGAGTGTGAAGGTTTGTGTTGATCTGATGAGGAAAGGGGAAACTATAGACCTGGCCTCCATCGCTCTCACACAGACCCTAAAGCACTCTGTGTGCAGTGTGTTACTCTCGTATATGGGCTGAACACCACCTCTCGCCTGTGCTTTATAGTACTGCTATTACTCTTCTGTTTTCACAGTCTTTGTATGGCTTCATATATCTCATTTACTTCACTTCTCTGGTCTCTGCCGCTAAAGCCAAGTTCctgtcatgtaaaaaaaaatacaaaataaatgcaaaaagatGGAAACTTCTATGCAGAAAAGCACTGCAGGGGAACACACCACAAACC
>TCONS_00032801
ATGGATCTTCCAGGAGGACATCTTGCTGTGGTGCTGTTCCTGTTTGTTCTGGTTTCCATGTCCACTGAAAACAACATTATCAGGTGGTGCACAGTGTCTGATGCTGAAGATCAGAAGTGTTTGGATTTAGCTGGAAATGCCACAGCCAGGAACCTTCGCGGACAACTAGTGTGTGTGAGGGGCCAAAGTCCCACCGACTGCATGAAGCAAATTAAGAATGGCACTGCAGATGCCTCTACTATGTATGCCGATGAAATCTACACAGCTGGATTTTGCTATGGCTTAGATGTGGCGGTTGGAGAATCTTATAACGGTGTGGACGGCATTAATTATTATGTAGTTGCTCTGGCACGGACGTCATCCAGTGATCTGTCACTGCTGGAGATGCACGAGCGCAGCTCTTGTCACCCAGGGATGAGGACTACAGTGGGCTGGACCGTCCCCATCGGCTTCCTGGTCAACACATCACAGATTAGTGTGGATGTGCAATGCAACTTTCCCCACGCGGTCGGAGATTTCTTTGGCTACAGCTGCGTCCCTGGCGTGAAGGACCCAGAACACGATCCCAAAGGAAACAACCCAAGGAACCTGTGTGAGGCCTGCATCGGGGACGAGAATGACCGCCACATTTGTGCCAACAACCCTCGAGAACGGCACTTTGGAGAGGCTGGAGCTCTGAGgtGTGTGGCAGAGAATCTTGGCGATGTTGCTTTTGTTAAGCACACTACAGTCTTTGACAACATGCAGGGTAAGAACCAGGAGTCTTGGGCGCTGGACTTGGAGCTGGAAGACTTGAAGCTCTTGTGTCCTGACGGGAGTGAAGCGAACCTGTTCCAGCATGAGAGCTGCCACCTGGCTGTAGTGCCAACCAATGCCGTGGTAGTGCGTTTGGAGGACAAATGCCGCGTTTACAAGTTCTTGGAACGTGTGCAGAACGCATTTGGTAACACCACTGAAGGATTTTCTCTGTTCAGCTCAGTGAATTATGGGCAGCCTGATGTGCTGTTCAGCGATTCCACCAAAAAGTTGCTCCGCGTCATGGGGACCTACACTTCCTGGCTGGGACCCAGTTATACCACCATACTGAGGGCTTTTGAGTGTGAAGGTTTGTGTTGATCTGATGAGGAAAGGGGAAACTATAGACCTGGC

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0006906 vesicle fusion biological_process
GO:0046031 ADP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0006096 glycolytic process biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0140115 export across plasma membrane biological_process
GO:0061025 membrane fusion biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0090174 organelle membrane fusion biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0007409 axonogenesis biological_process
GO:0045055 regulated exocytosis biological_process
GO:0030133 transport vesicle cellular_component
GO:0045202 synapse cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0005391 sodium molecular_function
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0004857 enzyme inhibitor activity molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-040709-1 Acts upstream of or within otolith development. Predicted to be located in extracellular region. Predicted to be active in endosome; extracellular space; and plasma membrane. Is expressed in epithalamus; otic vesicle; and vestibuloauditory system. Orthologous to human MELTF (melanotransferrin).

Ensembl:

ensembl_id ENSDARG00000040306

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033393 False 864 lncRNA 0.44 3 41504477 41512326
TCONS_00032801 True 1149 mRNA 0.51 9 41504752 41518340

Neighbor

gene id symbol gene type direction distance location
XLOC_016714 NA coding downstream 56586 41162103 ~ 41447891 (-)
XLOC_016717 BX890557.1 coding downstream 82755 41421606 ~ 41421722 (-)
XLOC_016716 NA coding downstream 268945 41233349 ~ 41235532 (-)
XLOC_016715 LO018352.1 coding downstream 292383 41211978 ~ 41212094 (-)
XLOC_016713 hs6st1a coding downstream 380464 40901997 ~ 41124013 (-)
XLOC_016719 d2hgdh coding upstream 27931 41546271 ~ 41562868 (-)
XLOC_016720 znf622 coding upstream 44733 41563073 ~ 41571454 (-)
XLOC_016721 zgc:110158 coding upstream 59167 41577507 ~ 41723487 (-)
XLOC_016722 NA coding upstream 233500 41751840 ~ 41772041 (-)
XLOC_016723 keap1a coding upstream 316685 41835025 ~ 41861040 (-)
XLOC_016711 BX005042.1 non-coding downstream 699509 40786665 ~ 40804968 (-)
XLOC_016725 BX663525.1 non-coding upstream 427635 41945975 ~ 41946896 (-)
XLOC_016727 BX663525.2 non-coding upstream 454197 41972537 ~ 41983756 (-)
XLOC_016743 NA non-coding upstream 1077584 42595924 ~ 42597593 (-)
XLOC_016745 NA non-coding upstream 1147562 42665902 ~ 42748662 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000190_00285157_00293756 OMP-1, OTOMP coding CI01000190 null 284331 ~ 293885 (+)