RNA id: TCONS_00032801


Basic Information

Item Value
RNA id TCONS_00032801
length 1149
RNA type mRNA
GC content 0.51
exon number 9
gene id XLOC_016718
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 41504477 ~ 41518340 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGATCTTCCAGGAGGACATCTTGCTGTGGTGCTGTTCCTGTTTGTTCTGGTTTCCATGTCCACTGAAAACAACATTATCAGGTGGTGCACAGTGTCTGATGCTGAAGATCAGAAGTGTTTGGATTTAGCTGGAAATGCCACAGCCAGGAACCTTCGCGGACAACTAGTGTGTGTGAGGGGCCAAAGTCCCACCGACTGCATGAAGCAAATTAAGAATGGCACTGCAGATGCCTCTACTATGTATGCCGATGAAATCTACACAGCTGGATTTTGCTATGGCTTAGATGTGGCGGTTGGAGAATCTTATAACGGTGTGGACGGCATTAATTATTATGTAGTTGCTCTGGCACGGACGTCATCCAGTGATCTGTCACTGCTGGAGATGCACGAGCGCAGCTCTTGTCACCCAGGGATGAGGACTACAGTGGGCTGGACCGTCCCCATCGGCTTCCTGGTCAACACATCACAGATTAGTGTGGATGTGCAATGCAACTTTCCCCACGCGGTCGGAGATTTCTTTGGCTACAGCTGCGTCCCTGGCGTGAAGGACCCAGAACACGATCCCAAAGGAAACAACCCAAGGAACCTGTGTGAGGCCTGCATCGGGGACGAGAATGACCGCCACATTTGTGCCAACAACCCTCGAGAACGGCACTTTGGAGAGGCTGGAGCTCTGAGgtGTGTGGCAGAGAATCTTGGCGATGTTGCTTTTGTTAAGCACACTACAGTCTTTGACAACATGCAGGGTAAGAACCAGGAGTCTTGGGCGCTGGACTTGGAGCTGGAAGACTTGAAGCTCTTGTGTCCTGACGGGAGTGAAGCGAACCTGTTCCAGCATGAGAGCTGCCACCTGGCTGTAGTGCCAACCAATGCCGTGGTAGTGCGTTTGGAGGACAAATGCCGCGTTTACAAGTTCTTGGAACGTGTGCAGAACGCATTTGGTAACACCACTGAAGGATTTTCTCTGTTCAGCTCAGTGAATTATGGGCAGCCTGATGTGCTGTTCAGCGATTCCACCAAAAAGTTGCTCCGCGTCATGGGGACCTACACTTCCTGGCTGGGACCCAGTTATACCACCATACTGAGGGCTTTTGAGTGTGAAGGTTTGTGTTGATCTGATGAGGAAAGGGGAAACTATAGACCTGGC

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0006906 vesicle fusion biological_process
GO:0046031 ADP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0006096 glycolytic process biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0140115 export across plasma membrane biological_process
GO:0061025 membrane fusion biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0090174 organelle membrane fusion biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0007409 axonogenesis biological_process
GO:0045055 regulated exocytosis biological_process
GO:0030133 transport vesicle cellular_component
GO:0045202 synapse cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0005391 sodium molecular_function
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0004857 enzyme inhibitor activity molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-040709-1 Acts upstream of or within otolith development. Predicted to be located in extracellular region. Predicted to be active in endosome; extracellular space; and plasma membrane. Is expressed in epithalamus; otic vesicle; and vestibuloauditory system. Orthologous to human MELTF (melanotransferrin).

Ensembl:

ensembl_id ENSDART00000130830

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033912 lncRNA downstream 56861 41441577 ~ 41447891 (-) True XLOC_016714
TCONS_00033390 lncRNA downstream 56915 41162103 ~ 41447837 (-) False XLOC_016714
TCONS_00032798 lncRNA downstream 56915 41162103 ~ 41447837 (-) False XLOC_016714
TCONS_00033391 lncRNA downstream 56915 41162258 ~ 41447837 (-) False XLOC_016714
TCONS_00033392 lncRNA downstream 56915 41266836 ~ 41447837 (-) False XLOC_016714
TCONS_00033394 lncRNA upstream 233500 41751840 ~ 41772041 (-) False XLOC_016722
TCONS_00033913 lncRNA upstream 233611 41751951 ~ 41771190 (-) True XLOC_016722
TCONS_00032813 lncRNA upstream 454197 41972537 ~ 41983756 (-) True XLOC_016727
TCONS_00032815 lncRNA upstream 509117 42027457 ~ 42030255 (-) False XLOC_016728
TCONS_00033914 lncRNA upstream 509117 42027457 ~ 42030986 (-) False XLOC_016728
TCONS_00032797 mRNA downstream 380739 41123277 ~ 41124013 (-) True XLOC_016713
TCONS_00032796 mRNA downstream 380955 40901997 ~ 41123797 (-) False XLOC_016713
TCONS_00032794 mRNA downstream 614488 40830768 ~ 40890264 (-) False XLOC_016712
TCONS_00032795 mRNA downstream 614748 40832974 ~ 40890004 (-) True XLOC_016712
TCONS_00032793 mRNA downstream 615287 40830768 ~ 40889465 (-) False XLOC_016712
TCONS_00032802 mRNA upstream 27931 41546271 ~ 41562868 (-) True XLOC_016719
TCONS_00032803 mRNA upstream 44733 41563073 ~ 41571454 (-) True XLOC_016720
TCONS_00032804 mRNA upstream 59167 41577507 ~ 41620112 (-) False XLOC_016721
TCONS_00032805 mRNA upstream 62449 41580789 ~ 41620112 (-) False XLOC_016721
TCONS_00032806 mRNA upstream 64505 41582845 ~ 41723165 (-) False XLOC_016721
TCONS_00032800 other downstream 83030 41421606 ~ 41421722 (-) True XLOC_016717
TCONS_00032799 other downstream 292658 41211978 ~ 41212094 (-) True XLOC_016715
TCONS_00032788 other downstream 909258 40595375 ~ 40595494 (-) True XLOC_016708
TCONS_00032787 other downstream 959691 40544946 ~ 40545061 (-) True XLOC_016707
TCONS_00032779 other downstream 1434900 40067808 ~ 40069852 (-) False XLOC_016701
TCONS_00032808 other upstream 98867 41617207 ~ 41620112 (-) True XLOC_016721
TCONS_00032811 other upstream 427635 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032833 other upstream 853669 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032837 other upstream 885721 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032848 other upstream 1154510 42672850 ~ 42704933 (-) True XLOC_016744

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000190_00285157_00293756.mRNA True 2149 mRNA 0.46 9 CI01000190 284331 ~ 293885 (+)