RNA id: TCONS_00032803


Basic Information

Item Value
RNA id TCONS_00032803
length 2098
RNA type mRNA
GC content 0.44
exon number 7
gene id XLOC_016720
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 41563073 ~ 41571454 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGGTTGTTTCACTATCCTCGTGTTTTCATCGCTGTTGTGGACCTGTAAACTTCCTCTACAGGAAATcgaataatcaaaTCATGTCATACACTTGCATAAGCTGCCGTGTGCAGTTTTCTGATGGGGAGGTCCAGCGGGCGCATTATAAAACCGACTGGCATCGCTACAATCTGAAGAGGAAGGTTGCTGACATGCCTCCGGTCACTGCAGAAAACTTTCAGGAGCGAGTGCTGGCGCAGCGGGCAGCGGCCGAGCAACAGAGTCAGGGTGGGGGACATGACGTGGCCTACTGCGCCACCTGCAACAAAAAGTTCTCCACCGACAATGCCTACACAAACCACATCCAGTCCAACAAGCACCAGCAGGCGGAGAAGAAAGCCCTGGCCACCGCCCAGGAGACTGTGCAGCGAATGAACGAGAAGAATCTGGAGAAAGGGGCGGGACTAGATAAAGATGCACAGAATGAGGCGATTCAAAAAGCAGTTAAAGAGCAGCAAAGACACACCCCTTCCAAAGCCACACCCACAGAAAAGCAGGTCAGAGAGCGGCCAGACAAACCACCTCGGCTGCAGTGGTTTGAGCAACAGGCCAAGAAGATCGCAAAAGAGGAgggtgaagaagaagaagaggaggaggaggATTGGGAAGATGTTGATGAGGATGAGGAAATGGATGATGACGATGAAGAGGAAGAGGAGATGGAGCAGGACTCTACATCTGGGGCAGCTCTTGCCCCCGGTTCAATCACAGTGACAGACTGTCTGTTCTGCGGACATCATTCACACTCACTCAGTCGAAACGTAACACACATGACCAAAACACACAGCTTCTTCATCCCAGACATTGAGTATCTGGTGGACCTGAGAGGACTGATGTCATACCTGGgagAAAAAGTCGGCGTTGGTAAGGTGTGCTTATGGTGCAATGAAAAAGGGAAGTCATTCTACTCTACAGAAGCGGTTCAAGCACACATGACCGACAAGAGTCACTGCAAACTCTTCACAGATGGAGACGCTGCACTTGAGTTTGCCGATTTCTATGATTTCAGGAGCAGTTATCCTGATGCTAAAGATGGAGTTGATGTGGAGATGAAGGATGGTGAACTGCCTGATGACAAGACTGTAGAGTTTGACGATGAGACGCTGGAGCTCACTTTGCCCTCTGGGGCTAAAATTGGCCATCGTTCTCTAATGAGATACTACAAGCAGAGGTTTGGTGTTCAGAGGGCATTGGTTCCAGCACATAACCAGAAGGCTGTTGGTCGAGTCCTCAAACAGTACAAAGCCCTCGGGTGGACAGGAGACTTCGGTAAGGGTTTCGTGAGCCAGCAGCAGAAGGACATGCAGTATGTACAGAGGATGAAGTCCAAGTGGATGCTGAGGACGGGCATGGGCAATAATGCCACCAAACAGACCCATTTCAGAGCTCAAGTCATGTTCTAGTCAATTCTTCATCATCAGTAAACACCAACTACTCTGACATAAAATCAGCACAAGAGACTGAAATAAGAATCATATATGTGTGTTGATTCAGCTGAGAACTGAGGGACCGTTcgtttaaaaatctaaattcagtcatcatttagtcactctttacttattttgaatgtttctgagtttctttcttcggcttaacaaaaaaagaatatgttttgaagaaagctggaaacctgtaaccattgacttccatagtatttatagaaatcaatggttacgggttttcaggtttcttcaaaatattttcttttggtatttaaagaaagaaactcagaaatgtttggaaccacttaaaggtgattacattttaatttgaaccCTTTAGGAGTTACTTGCAAATAAAACTGATGTCCAGATTGTAAGTTGAATCATTAATGATTGAGTAAATCtgataaaacattgtttttctgGTACCTGGGGATCTGAATCGTGTGCTGATCCACTATGAACATAATATTGCTACTTTAGGTTTTGTAATCATTCAGAATGACCTTTACTACCAATTATAGTTTAATTACGGCTTGTAAAAGGCATAAATATCATATAACACCTTTTTCTGAATTGTAACAGTACATTGTCAATAAAATAAGCAGTCAATCA

Function

GO:

id name namespace
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050927-1 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be involved in ribosomal large subunit biogenesis. Predicted to be located in cytoplasm. Predicted to be part of preribosome, large subunit precursor. Is expressed in optic cup and optic tectum. Orthologous to human ZNF622 (zinc finger protein 622).

Ensembl:

ensembl_id ENSDART00000022643

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033393 lncRNA downstream 50747 41504477 ~ 41512326 (-) False XLOC_016718
TCONS_00033912 lncRNA downstream 115182 41441577 ~ 41447891 (-) True XLOC_016714
TCONS_00033392 lncRNA downstream 115236 41266836 ~ 41447837 (-) False XLOC_016714
TCONS_00033910 lncRNA downstream 290605 41162385 ~ 41272468 (-) False XLOC_016714
TCONS_00033394 lncRNA upstream 180386 41751840 ~ 41772041 (-) False XLOC_016722
TCONS_00033913 lncRNA upstream 180497 41751951 ~ 41771190 (-) True XLOC_016722
TCONS_00032813 lncRNA upstream 401083 41972537 ~ 41983756 (-) True XLOC_016727
TCONS_00032815 lncRNA upstream 456003 42027457 ~ 42030255 (-) False XLOC_016728
TCONS_00033914 lncRNA upstream 456003 42027457 ~ 42030986 (-) False XLOC_016728
TCONS_00032802 mRNA downstream 205 41546271 ~ 41562868 (-) True XLOC_016719
TCONS_00032801 mRNA downstream 44733 41504752 ~ 41518340 (-) True XLOC_016718
TCONS_00032797 mRNA downstream 439060 41123277 ~ 41124013 (-) True XLOC_016713
TCONS_00032796 mRNA downstream 439276 40901997 ~ 41123797 (-) False XLOC_016713
TCONS_00032794 mRNA downstream 672809 40830768 ~ 40890264 (-) False XLOC_016712
TCONS_00032804 mRNA upstream 6053 41577507 ~ 41620112 (-) False XLOC_016721
TCONS_00032805 mRNA upstream 9335 41580789 ~ 41620112 (-) False XLOC_016721
TCONS_00032806 mRNA upstream 11391 41582845 ~ 41723165 (-) False XLOC_016721
TCONS_00032807 mRNA upstream 11722 41583176 ~ 41723487 (-) False XLOC_016721
TCONS_00032809 mRNA upstream 263571 41835025 ~ 41861040 (-) True XLOC_016723
TCONS_00032800 other downstream 141351 41421606 ~ 41421722 (-) True XLOC_016717
TCONS_00032799 other downstream 350979 41211978 ~ 41212094 (-) True XLOC_016715
TCONS_00032788 other downstream 967579 40595375 ~ 40595494 (-) True XLOC_016708
TCONS_00032787 other downstream 1018012 40544946 ~ 40545061 (-) True XLOC_016707
TCONS_00032779 other downstream 1493221 40067808 ~ 40069852 (-) False XLOC_016701
TCONS_00032808 other upstream 45753 41617207 ~ 41620112 (-) True XLOC_016721
TCONS_00032811 other upstream 374521 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032833 other upstream 800555 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032837 other upstream 832607 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032848 other upstream 1101396 42672850 ~ 42704933 (-) True XLOC_016744

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU437668 True 862 TUCP 0.55 3 CI01000190 254804 ~ 256762 (-)
striped catfish (Pangasianodon hypophthalmus) TU437668 False 1137 TUCP 0.59 5 NC_047620.1 1769193 ~ 1774652 (+)