Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_016701 |
| gene name | epha4a |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 40067808 ~ 40136024 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| epha4a | Predicted to enable transmembrane-ephrin receptor activity. Acts upstream of or within several processes, including animal organ development; cell-cell recognition; and regulation of nervous system development. Predicted to be located in early endosome and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in several structures, including central nervous system; germ ring; mesoderm; neural keel; and neural tube. Orthologous to human EPHA4 (EPH receptor A4). |
| id | name | namespace |
|---|---|---|
| GO:0033674 | positive regulation of kinase activity | biological_process |
| GO:0003404 | optic vesicle morphogenesis | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0030517 | negative regulation of axon extension | biological_process |
| GO:0021654 | rhombomere boundary formation | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0031641 | regulation of myelination | biological_process |
| GO:0009952 | anterior/posterior pattern specification | biological_process |
| GO:0009988 | cell-cell recognition | biological_process |
| GO:0061053 | somite development | biological_process |
| GO:0007411 | axon guidance | biological_process |
| GO:0048685 | negative regulation of collateral sprouting of intact axon in response to injury | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0030900 | forebrain development | biological_process |
| GO:0007169 | transmembrane receptor protein tyrosine kinase signaling pathway | biological_process |
| GO:0005768 | endosome | cellular_component |
| GO:0005769 | early endosome | cellular_component |
| GO:0043005 | neuron projection | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0043235 | receptor complex | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| GO:0005003 | ephrin receptor activity | molecular_function |
| GO:0005005 | transmembrane-ephrin receptor activity | molecular_function |
| GO:0004713 | protein tyrosine kinase activity | molecular_function |
| GO:0004714 | transmembrane receptor protein tyrosine kinase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-001207-7 | Predicted to enable transmembrane-ephrin receptor activity. Acts upstream of or within several processes, including animal organ development; cell-cell recognition; and regulation of nervous system development. Predicted to be located in early endosome and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in several structures, including central nervous system; germ ring; mesoderm; neural keel; and neural tube. Orthologous to human EPHA4 (EPH receptor A4). |
| ensembl_id | ENSDARG00000054454 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00032779 | False | 1693 | processed_transcript | 0.42 | 2 | 40067808 | 40069852 |
| TCONS_00032780 | False | 4795 | mRNA | 0.48 | 18 | 40067821 | 40136018 |
| TCONS_00032781 | False | 3387 | mRNA | 0.51 | 17 | 40069639 | 40136024 |
| TCONS_00032782 | False | 2961 | mRNA | 0.52 | 17 | 40069956 | 40135942 |
| TCONS_00032783 | True | 985 | mRNA | 0.52 | 3 | 40131692 | 40136018 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_016700 | NA | coding | downstream | 34750 | 39830685 ~ 40033058 (-) |
| XLOC_016699 | NA | coding | downstream | 240297 | 39826704 ~ 39827511 (-) |
| XLOC_016698 | slc25a36a | coding | downstream | 308749 | 39731284 ~ 39759059 (-) |
| XLOC_016696 | spsb4a | coding | downstream | 391979 | 39584066 ~ 39675829 (-) |
| XLOC_016697 | NA | coding | downstream | 455344 | 39610321 ~ 39612464 (-) |
| XLOC_016702 | si:ch211-122l24.6 | coding | upstream | 45609 | 40181633 ~ 40191603 (-) |
| XLOC_016703 | NA | coding | upstream | 58043 | 40194067 ~ 40196570 (-) |
| XLOC_016704 | NA | coding | upstream | 62793 | 40198817 ~ 40199780 (-) |
| XLOC_016705 | NA | coding | upstream | 69884 | 40205908 ~ 40211792 (-) |
| XLOC_016706 | NA | coding | upstream | 397939 | 40533963 ~ 40534863 (-) |
| XLOC_016694 | BX248328.1 | non-coding | downstream | 696881 | 39370811 ~ 39370927 (-) |
| XLOC_016681 | NA | non-coding | downstream | 1873329 | 38192959 ~ 38194479 (-) |
| XLOC_016707 | CR931819.2 | non-coding | upstream | 408922 | 40544946 ~ 40545061 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| bowfin (Amia calva) | AMCG00014252 | LOC106586540,LOC106582188,LOC101465476 | coding | CM030128.1 | CM030128.1 | 6399468 ~ 6414836 (-) |
