RNA id: TCONS_00032781


Basic Information

Item Value
RNA id TCONS_00032781
length 3387
RNA type mRNA
GC content 0.51
exon number 17
gene id XLOC_016701
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 40067808 ~ 40136024 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCTCAAACGCTAATTCCACCGGGACAGACGCAACTTCGGTCCGCGCGCGGAGCGGAGGAGACGCACACGAAATGACACCAATGGCTGCGCTTGTGTTCACAGCGACTTTTGCGCTAATAATCTGGATACCGACTTTCGCATTAACCGCACGGGTCTACCCTCCTAATGAAGTGACACTGCTGGACTCGAGAACTGTGCAAGGAGAATTGAAATGGGTTGCAAGCCCGACGGAAGGAGGGTGGGAAGAGGTGAGCATCATGGATGAGAAGAATACGCCAATCAGGACGTACCAGGTGTGCAACGTAATGGAACCCAGCCAGAACAACTGGCTCCGAACGGACTGGATCCCCCGTGGCGGAGCTCAGCGGGTCTACATCGAGATCAAATTCACCCTGCGTGACTGCAACAGCCTGCCAGGAGTCATGGGAACCTGCAAGGAGACCTTTAATCTTTACTATTATGAGTCCAACAATGACAAAGAGCGATACATCCGAGAAAACCAGTTCACCAAAATCGACACCATTGCGGCTGATGAAAGCTTCACGCAGGTGGACATAGGAGACCGCATCATGAAGCTGAACACGGAGGTGAGGGATGTGGGGATTTTGACAAGGAAGGGCTTCTACCTGGCCTTCCAGGACGTTGGGGCTTGCATTGCCTTGGTATCAGTACGGATCTTCTACAAGAAATGCCCGCTTACTGTACGCAACCTGGCCCAATTTCCAGACACCACCACCGGCGCAGACACCTCATCGCTAGTGGAGGTACGCGGATCCTGTGTGGACAATTCGGAGGAACGTGAGGTCCCTAAAATGTACTGCGGAGCAGATGGAGAATGGCTGGTGCCTATTGGAAACTGTTTGTGTAACCCTGGCTATGAAGAACATGAAGGGACATGTCAAGCCTGTAAGATCGGCAACTACAGAGCTCTAGCCACAGACGGCAGCTGCTCTAAGTGTCCCCTGCACAGCTACTCTGTGAGAGAGGGATCTACTTCCTGTGCCTGTGATAAAGGCTTCTTCAGGTCTGAGACGGACCCTGCATCTATGCCCTGCACACAGCCCCCATCTGCTCCTCAGCACCTCATTTCCAATGTGAACGAGACTTCGGTGAATCTGGAGTGGACGGCTCCAGCATCCTCTGGTGGCAGACAGGACCTTGCCTATAACGTTATATGCAAGCGGTGCAGCTCGGACGGTCAACGCTGTCAGCCCTGTGGCAATGGCATCCATTTTTCCCCTCAGCAGCTGGGCCTACGCACTACCCGGGTGTCCATAAATGACCTGCAGGCTCACACCAACTACACCTTCGAGATCTGGGCAGTCAACGGGGTCTCCAAACAGAGTCCTGGACCCGAACAAGCAGTCTCTGTGACTGTTACCACCAACCAAGCGGCTCCCTCTCCAGTTACCACCATCCAGGCCAAGGACATCACAAGACATGCTGTGTCTTTGGCATGGCAACAGCCCGAGAGACCCAATGGAGTCATTCTTGAGTACGAGGTCAAATACTATGAGAAGGATCAAAACGAGCGCAGTTATCGCATAATGAAGACTTCGTCCCGAAGCGCTGAGATCAAAGGCCTGAGCCCACTCACCTCCTACGTGTTTCATGTGCGTGCCCGCACCGCTGCTGGCTACGGAGAATTCAGTGCCCCTTTTGAGTTCATGACCAACTCAGTTCCTTCTCCCATCATCGGGGACGGAGCTAACTCCACCGTGCTCTTGGTGTCTGTGATCGGCAGTGTGATTTTGTTGCTCATCTTCATCGGCGTCTTCATCATCAGCCGCAGGAGAAGCAAATACAGCAAAGCCAAGCAGGATTCTGATGAGGAGAGGCATTTACACCCAGGAGTCCGGATCTATGTGGACCCCTTCACATACGAGGACCCCAACCAAGCAGTCCGTGAATTCGCTAAAGAAATCGACGCCTCCTGCATCAAGATCGAAAAGGTCATCGGCATTGGAGAATTCGGAGAGGTGTGCAGTGGCCGTCTCAAGATGCCTGGAAAGCGTGAGATCTGTGTGGCCATAAAAACCCTAAAGGCAGGATACACCGACAAGCAAAGGCGGGATTTTCTGAGCGAGGCCAGCATCATGGGCCAGTTTGACCACCCTAACATCATCCGATTGGAGGGAGTTGTCACTAAATGTAAGCCAGTTATGATCATCACAGAGTACATGGAGAACGGATCACTGGATGCTTTTCTTAggaagaatgatGGACGGTTTACAGTGATTCAGCTGGTGGGCATCCTGCGAGGCATTGCTTCAGGAATGAAATATCTCTCCGATATGAGCTATGTCCATCGTGACTTGGCGGCTCGCAACATTCTGGTCAACAGCAACCTGGTGTGCAAAGTGTCCGACTTTGGCATGTCTCGAGTTTTGGAGGAAGACCCAGATGCTGCTTATACCACCAGAGAAATAACAGGAACCTATCAATCACAGGGAGGCAAGATACCCATTCGCTGGACGGCTCCTGAAGCCATTACTTACAGGAAGTTCACCTCTGCATCTGACGTCTGGAGCTATGGCATCGTCATGTGGGAAGTGATGTCATATGGAGAGCGGCCATATTGGGACATGAGCAACCAGGATGTGATAAAGGCCATTGAGGAAGGCTACAGGCTGCCTCCTCCCATGGACTGTCCAGTTTCTTTGCACCAGTTGATGTTGGATTGCTGGCAGAAAGAGCGCGCAGAAAGGCCAAAGTTCAGTCAAATTGTCAACATGCTGGACAAACTCATCCGCAACCCTAACAGCCTGAAAAGGACAGGAGGAGAAATAGCCAGACCCAACACCACCCTCCTGGAGCCTAGCAGCCCAGAATTCACGTCTACCCTGGGATCAGTTGCCGACTGGCTGCAGGCCATCAACATGGAACGTTACAGAGACAACTTCACCGCTGCTGGCTATACCACTCCAGAAGCTGTGGTCCATATGACACAAGAGGACATGACGAGGATAGGGATCTCCACCGCTGCACACCAGGATAAGATCCTCAACAGCGCGCAGGGAATGTTGTCCCAGATGCAGCAAATGCAGGACAGGATGGTTCCTGTCTGAACCCCACGGGATCagaaaacacattcacacacactttggacttcctttttttattttggttctaAGAAAATCCATTTACCTCATCCATGCACTTTAAATTCAATTTTTTTGTgggggaaaaaaggaaaatatttcaaAGGAACGATACAGCACTTTTCTTTTAATAACGCCATCGAGTCAAGAGGATCGTTTAGCGCTGTACTGACGCTCTGGATGGGATTGTAGGAAGCTTTTCATTTCACCGAAACTACGAAGgagtttgtttatttgattttttatatgtatgtgcctgtaagtaaatgtataaatagtactgg

Function

GO:

id name namespace
GO:0033674 positive regulation of kinase activity biological_process
GO:0003404 optic vesicle morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0030517 negative regulation of axon extension biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0031641 regulation of myelination biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0009988 cell-cell recognition biological_process
GO:0061053 somite development biological_process
GO:0007411 axon guidance biological_process
GO:0048685 negative regulation of collateral sprouting of intact axon in response to injury biological_process
GO:0016310 phosphorylation biological_process
GO:0030900 forebrain development biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0005768 endosome cellular_component
GO:0005769 early endosome cellular_component
GO:0043005 neuron projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0005003 ephrin receptor activity molecular_function
GO:0005005 transmembrane-ephrin receptor activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-001207-7 Predicted to enable transmembrane-ephrin receptor activity. Acts upstream of or within several processes, including animal organ development; cell-cell recognition; and regulation of nervous system development. Predicted to be located in early endosome and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in several structures, including central nervous system; germ ring; mesoderm; neural keel; and neural tube. Orthologous to human EPHA4 (EPH receptor A4).

Ensembl:

ensembl_id ENSDART00000149895

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033896 lncRNA downstream 36581 39830685 ~ 40033058 (-) False XLOC_016700
TCONS_00033898 lncRNA downstream 36581 39936564 ~ 40033058 (-) False XLOC_016700
TCONS_00033900 lncRNA downstream 36612 40008087 ~ 40033027 (-) False XLOC_016700
TCONS_00033895 lncRNA downstream 36613 39830685 ~ 40033026 (-) False XLOC_016700
TCONS_00033897 lncRNA downstream 36613 39846697 ~ 40033026 (-) False XLOC_016700
TCONS_00032785 lncRNA upstream 58043 40194067 ~ 40196570 (-) True XLOC_016703
TCONS_00033387 lncRNA upstream 62793 40198817 ~ 40199412 (-) False XLOC_016704
TCONS_00032786 lncRNA upstream 62793 40198817 ~ 40199780 (-) True XLOC_016704
TCONS_00033901 lncRNA upstream 69884 40205908 ~ 40211792 (-) True XLOC_016705
TCONS_00033902 lncRNA upstream 397939 40533963 ~ 40534863 (-) True XLOC_016706
TCONS_00032774 mRNA downstream 310580 39731284 ~ 39759059 (-) False XLOC_016698
TCONS_00032773 mRNA downstream 393810 39584066 ~ 39675829 (-) True XLOC_016696
TCONS_00032770 mRNA downstream 510996 39549376 ~ 39558643 (-) False XLOC_016695
TCONS_00032784 mRNA upstream 45609 40181633 ~ 40191603 (-) True XLOC_016702
TCONS_00032793 mRNA upstream 694744 40830768 ~ 40889465 (-) False XLOC_016712
TCONS_00032792 mRNA upstream 694744 40830768 ~ 40889465 (-) False XLOC_016712
TCONS_00032794 mRNA upstream 694744 40830768 ~ 40890264 (-) False XLOC_016712
TCONS_00032795 mRNA upstream 696950 40832974 ~ 40890004 (-) True XLOC_016712
TCONS_00032777 other downstream 43017 39926961 ~ 40026622 (-) False XLOC_016700
TCONS_00032778 other downstream 43017 40008738 ~ 40026622 (-) True XLOC_016700
TCONS_00032776 other downstream 317083 39735552 ~ 39752556 (-) True XLOC_016698
TCONS_00032769 other downstream 698712 39370811 ~ 39370927 (-) True XLOC_016694
TCONS_00032764 other downstream 1001093 39062754 ~ 39068546 (-) False XLOC_016693
TCONS_00032787 other upstream 408922 40544946 ~ 40545061 (-) True XLOC_016707
TCONS_00032788 other upstream 459351 40595375 ~ 40595494 (-) True XLOC_016708
TCONS_00032799 other upstream 1075954 41211978 ~ 41212094 (-) True XLOC_016715
TCONS_00032800 other upstream 1285582 41421606 ~ 41421722 (-) True XLOC_016717
TCONS_00032808 other upstream 1481183 41617207 ~ 41620112 (-) True XLOC_016721

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000190_01061817_01090001.mRNA True 3978 mRNA 0.51 20 CI01000190 1061385 ~ 1090469 (+)