RNA id: TCONS_00032792


Basic Information

Item Value
RNA id TCONS_00032792
length 7333
RNA type mRNA
GC content 0.42
exon number 39
gene id XLOC_016712
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 40830768 ~ 40890264 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAGTCAACTCGCGCTGTCCTCTCCAATCTGTCAAACGAAGTGAAATACAAACAAGCAGAAACGTATGAATGATATGCTCAATTACTGCGTTATTTACATGCCCTACGTTTGTATTTTTACGTCTTTATGTTTTATAGTGACGTATTTAATTCAGTAAAGTGAAAATAGGACTCTTTCAAAGTTTCTTTCACTTTCTTTTCCATATTTGAAGCGTTTACCTTCTTCAGCGTCTATGGCGTTATTGTAGTTACATTTCTCCTCTAGCAAAAACGCGACTAAACTGTCTCACTTTCTCAGGATTTTGTGGAAAGATGTGGCTGTTTTGTGCTGCACTGCTGGCTCTGGGCTCTGTCGACTCTGTCAATGGGGACTCAAAAGCAGTTACAACGACACTGACTACTAAATGGCCCTCGACACCTCTCCTGTTGGAAGCCAGCGAGTTCCTTGCCGAGGAGAGTCAGGACAAGTTCTGGGCCTTTGTGGAAGCCAACCAGAACATTGAGAATGATCATGATGACACGGATCAGGCTTACTATGACCTGATCCTGAAGAGAGCTGGTGAGCTGCTGAGCCCAGTGCAGTTAAACCTGCTGAAGTTCTCCTTATCTCTGAGGGCTTACTCATCCACCATCCATTCTTTCCAGCAGATTGCATCCAATGAGCCTCCTCCATCTGGCTGTAAAGCATTCTTTAATGTACACGGACAGAAATCTTGTGATTCTGAAAGACTACAAGGCATGCTGGACAATGCCTTAGAACGGCCAAAGCCAAACCTGTTCAAAGGTGATCACAGATACCATTCAGCCAATCCTGATGCACCAGTTGTGATTTTGTACGCTGAAATGGGCACCAAAGAATTCTCCAGACTCCATCAACTGATGCTTTCAAAAGCCAACAAGGGCATGATCACTTATGTTCTGCGGCACTTTCTTGCTAGcccaagtaaaagtaaagtacacCTGTCTGGATATGGAGTGGAACTGGCCATCAAAAACCAGGAGTACAAAGCCAAAGACGACACACAAGTTCAGGCTGGAGCTGATGCAAATGCAACGGTAATAGGTGAAAATGATCTGGTGGATGAAGTGCAGGGCTTTCTTTTTGGCAAACTCAAAACCATTTACCCTGAACTTAAGGAACAGCTGAAGGAGCTCCGGAAGCATTTGATAGAGAGTACCAATGAAATGGCTCCACTCAAAGTCTGGCAAATGCAAGATCTCAGCTTTCAGACTGCTGCTCGTATCCTGGCAGCTCCCTCTGTGGATGCTCTCAATGTCATGAAGGATTTGAGCCAAAACTTTCCCACCAAAGCCAGGTCCATAACAAAAACGGTGGTTAATTCGGAGATCCGTAAGGAGATTGAGGAGAATCAAAAGTATTTTAAGGGGACTTTAGGGCTCCAGCCTGGAGACTCAGCTCTGTTCATCAATGGACTCCATATTGACTTGGATGTGCAGGATATTTTCAGTGTTTTTGATGTGTTGAGGAATGAGGCAAGGGTCATGGAGGGTCTGCGTAGTCTGCTCATAGAAACGCCATACATCCACGACATCCTCAAACTCAACGTTCAGCCTTCAGACTCTGACTATGCCGTAGACATCCGCAACCCTGCTGTTCACTGGATTAATAACCTGGAGACAGACGGCAGATATGCTTCCTGGCCCTCTAATGTGCAAGAACTGCTGCGGCCCACTTTTCCTGGAGTCATTCGACAGATCCGGAAGAACTTCCATAATCTGGTGATGATTCTGGATCCGACCCATGAGAACACGGCTGAGCTGCTCGGAGTGGCAGAGATGTTTTACAGCAACAACATCCCACTCAGGATTGGCGTGGTGTTTGTGGTGAACGATTCTGATGATGTTGATGGGATGCAAGATCCTGGTGTGGCTCTTCTTCGAGCTTTCAACTATATAGCTGATGACGTGGACGGCCAAATGGCCTTCGATGCTGTCATATCAaTAATGAATAGGATTCCCAGTGGAGACAAACTGAAGGTGGAGCATGTGGTGGGTGTGTTGGAGAAGAGATATCCATATGTAGAGATCAGCAGCATCTTGGGCCCTGACTCTGCTTACGAAAACAACAGAAAAGAGGGAAAGGCATATTATGAGCAGACTGGTGTTGGCCCTCTGCCAGTGGTGTTGTATAATGGTATGCCTTTACAGCGTGAGCAGTTAGACCCTGATGAACTTGAAACGGTCGTCATGCACAAGATCTTGGAGACCACCAGCTTTTTTCAGCGCACTGTCTATCTGGGTGAGCTGAACAGTGATCATGACGTGGTGGATTATATCATGAATCAGCCCAACGTGGTCCCTCGAATCAATTCCAGAATTCTGAGCACCAGCAGGAATTATCTGGACCTTTCCGCCACCAATAATCATTTTATTGACGAATATGCACGTTTCCTGTTTTTGGATGCCAAAGACAAGAATGCAGCGGTGGCCAACAGTATGAATTACATGACAAAGAAAGATGATGGCATCATCCGTCCGGTGACTTTCTGGGTAGTGGGAGACTTTGACCAGCCATCGGGTCGACAGCTGCTGTATGATGCCATACGTCACATGaAAACCAGTAATAATGTGCGATTAGGACTGATCAATAACCCCAGTGAGAACCCCTCTAATGAGAACAGTCTGATCGCTCGAGCCATATGGGCAGCCATGCAGACGCAAACCTCCAACAACGCCAAAAATTTCATCACCAAAATGGCTAAAGAGGAGACGGCGCAGGCTCTTTACGGAGGCAGTGACATTGCGGAGTTTGCTGTCGGGGGCATGGATGTTCCTCTCTTTAAGAGCGCGTATGAGTCTCCTAATGTGAACTTCCTGCTGGCTCATTCTGCGTACTGTAGAGATGTCCTCAAACTGCAGAAGGGCCAGAGAGCTGTGATCAGCAATGGAAGGATCATTGGCCCACTGGAGGAAAGGGAGGTCTTTAACCAGGATGATTTCCTGCTTTTGGAGAGCATTATTCTGAAGACATCAGGGGAGCGGATAAAGGGCAAAATCCAACAGATGGGCATGGTAGAGGACAGAGCTAGTGATCTGGTGATGAAGGTGGATGCCCTGCTGTCTTCACAGCCGAAAGGGGAAGCAAGGATCGAGCACACTTTTGCTGAAGACAGATACAGCGCTGTGAAAATCAGACCAAAGGAAGAGGAAGTGTACTTCGATGTTGTAGCTGTTTTAGATCCAGTGACCAGAGATGCTCAGAAACTAGCACCTCTACTCCTGGTATTGAAGCAGCTGGTGAACGTCAACCTGCGAGTGTTCATGAACTGCCAGTCCAAGCTCTCTGACCTCCCGCTGAAAAGttttTATCGATATGTTTTGGAGCCAGAGATTGTGTTTCTGACCGATAGTAGCTTTGCTCCTGGTCCGATGGCTAAGTTCTTAGATATGCCTCAGTCGCCTTTGTTCACTCTGAACCTGAACACCCCAGAAAGCTGGATGGTTGAGTCTGTCCACACACGTTACGATCTGGATAACATATACCTTGAAGAGGTGGACAGTGTCGTGGCCGCCGAGTATGAGTTGGAGTATTTATTACTGGAGGGTCACTGTTTTGACGTGACCACAGGTCAGCCTCCCCGTGGTCTGCAGTTCACTCTGGGCACTGCCTCCGACCCTGTCATAGTGGACACCATCGTCATGGCCAACCTGGGTTATTTCCAGCTGAAAGCAAACCCAGGAGCCTGGATGCTCAGGCTGAGGAAAGGCAGGTCGGATGATATCTACAAAATCTACAGTCACGATGGCACAGACTCTCCAGCCGAAGCTGATGATTTAATCGTCGTCCTTAACAACTTCAAGAGCAAGATCATTAAAGTGAAAGTGCAGAAAAAGCCTGATATGATAAATGAGGAGCTTCTCAGTGATGGTACCCATGAGAACGAGTCTGGATTCTGGACATCTATAGCCAGAGGATTCACTGGTGGTTCAAACCCAGAAGAACCCAAACAGGAAAAAGACGATGTTATCAACATTTTCTCTGTGGCCTCTGGTCATTTATACGAGCGGTTCCTCAGGATAATGATGCTGTCTGTGCTCAAACACACCAAGACACCCGTCAAGTTCTGGTTCCTCAAAAACTACCTGTCGCCAACTTTTAAGGAATTCATTCCATATATGGCAGAGAAGTATGGTTTCCAGTATGAGTTGGTGCAGTATAAATGGCCACGTTGGCTTCACCAGCAGACAGAAAAGCAAAGGATCATTTGGGGCTATAAGATTCTGTTCCTCGACGTGCTCTTCCCGCTGGCTGTGGACAAGTTCCTCTTTGTGGATGCGGATCAGATAGTTCGCACAGACCTGAAGGAGCTGCGAGATTTTGACCTAGAAGGGGCGCCTTATGGTTACACACCTTTCTGCGAGAGCCGAAGAGAAATGGACGGATATCGTTTTTGGAAGTCTGGATACTGGGCCAGTCATTTGGCCGGACGTAAATACCACATCAGTGCTCTGTATGTGGTCGATCTGAAGAAGTTCAGGAAGATTGCAGCTGGAGACCGACTGAGAGGCCAGTACCAGGGTCTGAGTCAAGACCCCAACAGTCTGTCTAATCTGGACCAGGATTTGCCCAACAACATGATTCACCAAGTGCCAATTAAGTCACTTCCTCAGGAATGGCTTTGGTGTGAAACCTGGTGTGATGATGCGTCTAAAAAGAAAGCCAAAACTATAGATCTGTGCAATAACCCACAAACAAAAGAGCCGAAGCTGCAGGCTGCTGTACGTATAGTAGGTGAGTGGAGCGACTATGACCAGGAGATAAAGAGAATCTACAACAACTTCCTGGATGAGAAAGAAAGAGGCACCTTAGAAGGCTATCAGTCAACAGACAGAAAACACCCAGGTGGTGTTACACACTCAGAGCTCTGAGCTGAGGCACTGCAACTGAAGAACAGGGGACTCTGTTCAAAGAGTCGTCTCTTTTTCAACCTTTTTAAAACCAAGCCTATCCTCCAGGAATGGGTTGACATTCGTGCTGAACTTGACTTGAACAGAATTCATGCAAAATTCTTGCGTTTGTACCTGAGGTTTTTGAGGAAATCACACGGACAGACAAAAGCTCCTCTTTCTAGGTAATTTTAATATTGAACCTCAAATAAAGatgcaataaaaaacaaacaaacaaacaaacaaaaaacagtttCACTAGAGCAGAAAGACTGCAGTCGTACAGTAgggaatgatttaattaaataaataactgcatgtgctcaattttattaataaaaccgatttcataaacatttcttttttactGTAACATTAGGCAATGACTCATTTTCATGAAAATGATTAGTAAATCATGAAATTTGAGTTGCAGAATGTTTTTTTAAGGCCACTCATGCTAATGAAAAAATTAATGTCCTAACAGTTGGACTTAAAAGCACAGATCATTTCCTTTGACGAATCACAGTCCAGTTAAAGACTTGCTTTAAATGATGTTTTTGATAAACAAGTCAGTGCTAGCCTGGAAAGGTTTTGagttgtttttcatactatgtaGTTTCACAAAATGTGTAAAATCGAATTGCTCATCAAAAGACTTTGAACTCAGGAACAAGTCGTCAGTTGATTTAGTCGTAGCTAAAGATTTAGTTTTGTTAACTTCACAGGAGGGAACTTTAATTTGCTGAAAATTTTCTCTGGGCAACGAAAAGCTTGTTGCAACATAATGTTGGTTTGtacgctgcaaaaaaaaaagtgtttctaacgttctagtccaaatatttaaaggttcttaaatcaagaagcatttcctgcacaagtaaaataaaatatggttTGGTTTTCATAAATACTTGGTCAAAATtgaatgagtttttccttaaaacaacctAAATAATGTTGGTGGGGCAAGTAAAATAATATGaattcaaaaataatataaattttttaattatttagcgcTTCTAAAAGAACACTCATTCAATTTGtaccaattatttaaaaaaaaaaacaagccatatatattttttttacttgtaaactacttttagcttttttttttttttcttcctgattTGGGACTACAAATAAAactaagtgtttttttattttttgcagtgcacagtagttacactttaaaatgatttatagtaGCAGCAGCCGCTTTGAATGTTAACACTCGACTGAATggccgttatcagtggttatcaactgatagatatgggccagtaggttACAattcatccacatggttaatcagctatacttgTACTTAaaactccagatctgtttttacagtacATGTTACGGTAGGGTGTAGTGTTGAAGTAAGGGTAGaagttaataattaaatacaattaatgggaaatttactaaataatataCATGATTATCGTGGTTAATCAACTATGCTAATAGAGAAGAcgccagatccagatctgtttttacattactgtgacggttgggtttagtgttggTGTAGGGGTAAAATACAAATTGATGGGAAATttagaaaacaatttaaataattttcgtTAACTTCCAGCCACAGCAGTATGTGATCTACAGCTGATTAACCATGAGGATGGATgaaaacagccttctgagcctactagtaggtgcaAAAGGCCCCTATTCGCCAATATCTGTCAACTGATAatcactgataacgcccattcagtCGAGCGATAACATTCGAATTGGCTGATAGCATTCAGTTAATAAAACTCAAAAGTCAACTCTAAAGTCAGTAGTCCCTACAGGATTGAAATCATGGCTGTAGAGTATTATGAGGGCAAAGgggaaaaaatctactttttagcAGACATTGCTTACAGGTTTACAGGTTGTTGGAATTGTTTTTTGTTCGTTTTAATGTCACTCAACTCAAAGATGTGGTGATCTTGTCTGATTGTCACCTATGCTTATTACAATTCGTTTCTGTGGTATTGCTCTTTTAGGTTTTGAGAATGGCCTCTGTTGACCACTATATGTTGGTTTATAATCCATGAAATGAGATTTAAGTAATACAGATGTGTTGCATCTTGAGCGATTAGCTGGAAAAATCACCTGGCAATAGAGCCCAGTGTTTCAGTAATATCagattttaaatggaaaattggGTTTGCGCAGTgccttgtgctttattctgtttGAGAGGTACATTACAGTCTTGTGGTTTGTCTACTCTCTGCTGTTTTTTATGGAGTATATTCAATATGGGGAAGATGAACTGATTTAGTCAATGCTATGATACTTTGGAATATACTGTAAGAGTAATTGTGGGATgacaatattttgtaataaaagatGTACCAAATGGTagcatgtttgtttatttatttatttatttatttattgtaaatt

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0018279 protein N-linked glycosylation via asparagine biological_process
GO:0071712 ER-associated misfolded protein catabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0003980 UDP-glucose molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-619 Predicted to enable UDP-glucose:glycoprotein glucosyltransferase activity and unfolded protein binding activity. Predicted to be involved in ER-associated misfolded protein catabolic process and protein N-linked glycosylation via asparagine. Predicted to act upstream of or within protein glycosylation. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Orthologous to human UGGT1 (UDP-glucose glycoprotein glucosyltransferase 1).

Ensembl:

ensembl_id ENSDART00000180824

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032791 lncRNA downstream 25800 40786665 ~ 40804968 (-) True XLOC_016711
TCONS_00033389 lncRNA downstream 60964 40766601 ~ 40769804 (-) False XLOC_016710
TCONS_00033908 lncRNA downstream 60984 40767225 ~ 40769784 (-) True XLOC_016710
TCONS_00033388 lncRNA downstream 118551 40639420 ~ 40712217 (-) False XLOC_016709
TCONS_00033909 lncRNA upstream 144054 41033519 ~ 41123797 (-) False XLOC_016713
TCONS_00033390 lncRNA upstream 272638 41162103 ~ 41447837 (-) False XLOC_016714
TCONS_00032798 lncRNA upstream 272638 41162103 ~ 41447837 (-) False XLOC_016714
TCONS_00033391 lncRNA upstream 272793 41162258 ~ 41447837 (-) False XLOC_016714
TCONS_00033910 lncRNA upstream 272920 41162385 ~ 41272468 (-) False XLOC_016714
TCONS_00032784 mRNA downstream 639165 40181633 ~ 40191603 (-) True XLOC_016702
TCONS_00032781 mRNA downstream 694744 40069639 ~ 40136024 (-) False XLOC_016701
TCONS_00032780 mRNA downstream 694750 40067821 ~ 40136018 (-) False XLOC_016701
TCONS_00032796 mRNA upstream 12532 40901997 ~ 41123797 (-) False XLOC_016713
TCONS_00032797 mRNA upstream 233812 41123277 ~ 41124013 (-) True XLOC_016713
TCONS_00032801 mRNA upstream 615287 41504752 ~ 41518340 (-) True XLOC_016718
TCONS_00032802 mRNA upstream 656806 41546271 ~ 41562868 (-) True XLOC_016719
TCONS_00032803 mRNA upstream 673608 41563073 ~ 41571454 (-) True XLOC_016720
TCONS_00032788 other downstream 235274 40595375 ~ 40595494 (-) True XLOC_016708
TCONS_00032787 other downstream 285707 40544946 ~ 40545061 (-) True XLOC_016707
TCONS_00032779 other downstream 760916 40067808 ~ 40069852 (-) False XLOC_016701
TCONS_00032777 other downstream 804146 39926961 ~ 40026622 (-) False XLOC_016700
TCONS_00032799 other upstream 322513 41211978 ~ 41212094 (-) True XLOC_016715
TCONS_00032800 other upstream 532141 41421606 ~ 41421722 (-) True XLOC_016717
TCONS_00032808 other upstream 727742 41617207 ~ 41620112 (-) True XLOC_016721
TCONS_00032811 other upstream 1056510 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032833 other upstream 1482544 42372009 ~ 42375109 (-) True XLOC_016738

Expression Profile

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