RNA id: TCONS_00032802


Basic Information

Item Value
RNA id TCONS_00032802
length 1833
RNA type mRNA
GC content 0.47
exon number 10
gene id XLOC_016719
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 41546271 ~ 41562868 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATTTGAAATATCTAATGTGGAGGGTGGACAGTAAGAAGAACCAGTACTTTTATAATATAATGTGATATCAGCTGAAGCTCTCTTCACATCGGACACAATATGGGGCTGTTTCAGAAGTGCTCACGACTCTCTCTGAGGTCCAGCTATATGTGGTCAGTCTGTCCTCAGTACAGCATTGCAGTCACTGCCCGAGAGACCCCAGACAGGGCTCTGATAGTGCACTGGACTCAGCATCGTGATGTGCACAACAGCAGACGGCTGGGAGCCAATCCAGCCAACCCCAGTGCTGCTCCTCCACGCTTACCCTTCTCCAGGGTCACACAGGAGGATCTGTCCTTCTTCAGAGCGCTACTGCCTGGAAGAACCATCACTGATCCAGACCTGCTGAAGTCCAGTAATGTAGACTGGCTTAAGACTGTACAAGgTAGTAGTGATGTTCTCCTGAGACCCAAAACAACAGAAGAGGTCTCTCAGATTCTCAGGTACTGTAATGAGCGAAATCTGGCAGTGTGTCCGCAGGGAGGAAACACAGGTCTGGTGGGAGGAAGTGTGCCTGTGTTTGATGAAATCATCCTTTCCACTTCTCTAATGAACCAAGTCTTCGCCTTCGACAATATCTCAGGTATCCTCACTTGTCAGGCAGGCTGTGTGTTGGAAAACCTGTCTCACTATCTAGAGGAGAGAGACTTCATCATGCCGCTGGATCTCGGAGCAAAGGGAAGCTGtcatattggagggaatgtgtcTACTAATGCAGGTGGTCTCAGACTTCTGCGCTATGGCTCACTTAGAGGGACGGTTCTGGGCCTGGAAGTGGTTTTGGCAGATGGACGTGTTTTGAACTGTCTGGCCACACTTCGCAAGGACAACACGGGTTATGACCTCAAGCAGCTTTTCATTGGCTCAGAAGGGACATTAGGAGTCATTACTGCTGTTTCCATCCTGTGCCCCCGCAAGCCTAAAGCTGTCAATGTAGCCTTTTTAGggtgctccagtttccagcAACTACTGGAAACATTTCAGTGTTGTAGAGGGATGCTGGGAGAGATCCTGTCTGCTTTTGAGTTTTTAGATGCCTCCTGTATGAACCTTCTGGAGAAGCATCTGAAACTCACCAACCCCATCACAGAATGTCCCTTTTACATTGTCATTGAGACTGCTGGATCCAACGCCACCCATGATGAAGAAAAGCTACATCAATTCCTTGAAGAAGTCATGACATCATCTCTGGTCACTGACGGGACAGTTGCGACAGAGGCAACAAAAATCAAGGCATTGTGGTCTTTGAGGGAGAGAGTCACAGAAGCTCTGACGCATGAAGGATACACCTACAAATATGACATCTCCCTTCCTGTGGAGAAGATCTATGATTTAGTCCAAGATATGAGGAGGCACCTTGGAGGCATGGCCAAGAATGTCGTCGGCTATGGACACGTTGGGGATGGAAATCTTCATTTAAACATCACTTCCCCCTCTAAAGACTTTGCTCTGCTGGCTGCCATTGAGCCATATGTGTATGAGTGGACGTCTCAGTGGAAAGGCAGCATCAGTGCAGAGCATGGGCTCGGTCTGAAGAAGAGAAACTACATCTACTACAGTAAACCCTCAGAGGCAGTCGCTCTCATGGGCAGCATTAAAGCCATGCTGGATCCTAAAGGCATCCTCAACCCTTACAAAACACTGCCAGACAACATAAACTAATGGTTTCATGGTGATCAGGATTTCTATGAAAATTAAGGATGTCAATTTACCACAGTATTATTGATGTAGTATGTTTAATGTATTAAATGGGCTATAATAGATTCCAAGTACTTAATTTGTACACAATTGT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0071949 FAD binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-482 Predicted to enable FAD binding activity and limonene-1,2-diol dehydrogenase activity. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in D-2-hydroxyglutaric aciduria 1. Orthologous to human D2HGDH (D-2-hydroxyglutarate dehydrogenase).

Ensembl:

ensembl_id ENSDART00000084597

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033393 lncRNA downstream 33945 41504477 ~ 41512326 (-) False XLOC_016718
TCONS_00033912 lncRNA downstream 98380 41441577 ~ 41447891 (-) True XLOC_016714
TCONS_00033391 lncRNA downstream 98434 41162258 ~ 41447837 (-) False XLOC_016714
TCONS_00033394 lncRNA upstream 188972 41751840 ~ 41772041 (-) False XLOC_016722
TCONS_00033913 lncRNA upstream 189083 41751951 ~ 41771190 (-) True XLOC_016722
TCONS_00032813 lncRNA upstream 409669 41972537 ~ 41983756 (-) True XLOC_016727
TCONS_00032815 lncRNA upstream 464589 42027457 ~ 42030255 (-) False XLOC_016728
TCONS_00033914 lncRNA upstream 464589 42027457 ~ 42030986 (-) False XLOC_016728
TCONS_00032801 mRNA downstream 27931 41504752 ~ 41518340 (-) True XLOC_016718
TCONS_00032797 mRNA downstream 422258 41123277 ~ 41124013 (-) True XLOC_016713
TCONS_00032796 mRNA downstream 422474 40901997 ~ 41123797 (-) False XLOC_016713
TCONS_00032794 mRNA downstream 656007 40830768 ~ 40890264 (-) False XLOC_016712
TCONS_00032795 mRNA downstream 656267 40832974 ~ 40890004 (-) True XLOC_016712
TCONS_00032803 mRNA upstream 205 41563073 ~ 41571454 (-) True XLOC_016720
TCONS_00032804 mRNA upstream 14639 41577507 ~ 41620112 (-) False XLOC_016721
TCONS_00032805 mRNA upstream 17921 41580789 ~ 41620112 (-) False XLOC_016721
TCONS_00032806 mRNA upstream 19977 41582845 ~ 41723165 (-) False XLOC_016721
TCONS_00032807 mRNA upstream 20308 41583176 ~ 41723487 (-) False XLOC_016721
TCONS_00032800 other downstream 124549 41421606 ~ 41421722 (-) True XLOC_016717
TCONS_00032799 other downstream 334177 41211978 ~ 41212094 (-) True XLOC_016715
TCONS_00032788 other downstream 950777 40595375 ~ 40595494 (-) True XLOC_016708
TCONS_00032787 other downstream 1001210 40544946 ~ 40545061 (-) True XLOC_016707
TCONS_00032779 other downstream 1476419 40067808 ~ 40069852 (-) False XLOC_016701
TCONS_00032808 other upstream 54339 41617207 ~ 41620112 (-) True XLOC_016721
TCONS_00032811 other upstream 383107 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032833 other upstream 809141 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032837 other upstream 841193 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032848 other upstream 1109982 42672850 ~ 42704933 (-) True XLOC_016744

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000190_00259998_00265222.mRNA True 1656 mRNA 0.49 9 CI01000190 259998 ~ 265304 (+)