XLOC_016720 (znf622)


Basic Information

Item Value
gene id XLOC_016720
gene name znf622
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 41563073 ~ 41571454 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032803
AAAGGTTGTTTCACTATCCTCGTGTTTTCATCGCTGTTGTGGACCTGTAAACTTCCTCTACAGGAAATcgaataatcaaaTCATGTCATACACTTGCATAAGCTGCCGTGTGCAGTTTTCTGATGGGGAGGTCCAGCGGGCGCATTATAAAACCGACTGGCATCGCTACAATCTGAAGAGGAAGGTTGCTGACATGCCTCCGGTCACTGCAGAAAACTTTCAGGAGCGAGTGCTGGCGCAGCGGGCAGCGGCCGAGCAACAGAGTCAGGGTGGGGGACATGACGTGGCCTACTGCGCCACCTGCAACAAAAAGTTCTCCACCGACAATGCCTACACAAACCACATCCAGTCCAACAAGCACCAGCAGGCGGAGAAGAAAGCCCTGGCCACCGCCCAGGAGACTGTGCAGCGAATGAACGAGAAGAATCTGGAGAAAGGGGCGGGACTAGATAAAGATGCACAGAATGAGGCGATTCAAAAAGCAGTTAAAGAGCAGCAAAGACACACCCCTTCCAAAGCCACACCCACAGAAAAGCAGGTCAGAGAGCGGCCAGACAAACCACCTCGGCTGCAGTGGTTTGAGCAACAGGCCAAGAAGATCGCAAAAGAGGAgggtgaagaagaagaagaggaggaggaggATTGGGAAGATGTTGATGAGGATGAGGAAATGGATGATGACGATGAAGAGGAAGAGGAGATGGAGCAGGACTCTACATCTGGGGCAGCTCTTGCCCCCGGTTCAATCACAGTGACAGACTGTCTGTTCTGCGGACATCATTCACACTCACTCAGTCGAAACGTAACACACATGACCAAAACACACAGCTTCTTCATCCCAGACATTGAGTATCTGGTGGACCTGAGAGGACTGATGTCATACCTGGgagAAAAAGTCGGCGTTGGTAAGGTGTGCTTATGGTGCAATGAAAAAGGGAAGTCATTCTACTCTACAGAAGCGGTTCAAGCACACATGACCGACAAGAGTCACTGCAAACTCTTCACAGATGGAGACGCTGCACTTGAGTTTGCCGATTTCTATGATTTCAGGAGCAGTTATCCTGATGCTAAAGATGGAGTTGATGTGGAGATGAAGGATGGTGAACTGCCTGATGACAAGACTGTAGAGTTTGACGATGAGACGCTGGAGCTCACTTTGCCCTCTGGGGCTAAAATTGGCCATCGTTCTCTAATGAGATACTACAAGCAGAGGTTTGGTGTTCAGAGGGCATTGGTTCCAGCACATAACCAGAAGGCTGTTGGTCGAGTCCTCAAACAGTACAAAGCCCTCGGGTGGACAGGAGACTTCGGTAAGGGTTTCGTGAGCCAGCAGCAGAAGGACATGCAGTATGTACAGAGGATGAAGTCCAAGTGGATGCTGAGGACGGGCATGGGCAATAATGCCACCAAACAGACCCATTTCAGAGCTCAAGTCATGTTCTAGTCAATTCTTCATCATCAGTAAACACCAACTACTCTGACATAAAATCAGCACAAGAGACTGAAATAAGAATCATATATGTGTGTTGATTCAGCTGAGAACTGAGGGACCGTTcgtttaaaaatctaaattcagtcatcatttagtcactctttacttattttgaatgtttctgagtttctttcttcggcttaacaaaaaaagaatatgttttgaagaaagctggaaacctgtaaccattgacttccatagtatttatagaaatcaatggttacgggttttcaggtttcttcaaaatattttcttttggtatttaaagaaagaaactcagaaatgtttggaaccacttaaaggtgattacattttaatttgaaccCTTTAGGAGTTACTTGCAAATAAAACTGATGTCCAGATTGTAAGTTGAATCATTAATGATTGAGTAAATCtgataaaacattgtttttctgGTACCTGGGGATCTGAATCGTGTGCTGATCCACTATGAACATAATATTGCTACTTTAGGTTTTGTAATCATTCAGAATGACCTTTACTACCAATTATAGTTTAATTACGGCTTGTAAAAGGCATAAATATCATATAACACCTTTTTCTGAATTGTAACAGTACATTGTCAATAAAATAAGCAGTCAATCA

Function

symbol description
znf622 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be involved in ribosomal large subunit biogenesis. Predicted to be located in cytoplasm. Predicted to be part of preribosome, large subunit precursor. Is expressed in optic cup and optic tectum. Orthologous to human ZNF622 (zinc finger protein 622).

GO:

id name namespace
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050927-1 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be involved in ribosomal large subunit biogenesis. Predicted to be located in cytoplasm. Predicted to be part of preribosome, large subunit precursor. Is expressed in optic cup and optic tectum. Orthologous to human ZNF622 (zinc finger protein 622).

Ensembl:

ensembl_id ENSDARG00000014692

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032803 True 2098 mRNA 0.44 7 41563073 41571454

Neighbor

gene id symbol gene type direction distance location
XLOC_016719 d2hgdh coding downstream 205 41546271 ~ 41562868 (-)
XLOC_016718 NA coding downstream 44733 41504477 ~ 41518340 (-)
XLOC_016714 NA coding downstream 115182 41162103 ~ 41447891 (-)
XLOC_016721 zgc:110158 coding upstream 6053 41577507 ~ 41723487 (-)
XLOC_016722 NA coding upstream 180386 41751840 ~ 41772041 (-)
XLOC_016723 keap1a coding upstream 263571 41835025 ~ 41861040 (-)
XLOC_016724 ebi3 coding upstream 365149 41936603 ~ 41942666 (-)
XLOC_016725 BX663525.1 coding upstream 374521 41945975 ~ 41946896 (-)
XLOC_016727 BX663525.2 non-coding upstream 401083 41972537 ~ 41983756 (-)
XLOC_016743 NA non-coding upstream 1024470 42595924 ~ 42597593 (-)
XLOC_016745 NA non-coding upstream 1094448 42665902 ~ 42748662 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G382815 NA unknown CI01000190 null 254804 ~ 256762 (-)