XLOC_016719 (d2hgdh)


Basic Information

Item Value
gene id XLOC_016719
gene name d2hgdh
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 41546271 ~ 41562868 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032802
ACATTTGAAATATCTAATGTGGAGGGTGGACAGTAAGAAGAACCAGTACTTTTATAATATAATGTGATATCAGCTGAAGCTCTCTTCACATCGGACACAATATGGGGCTGTTTCAGAAGTGCTCACGACTCTCTCTGAGGTCCAGCTATATGTGGTCAGTCTGTCCTCAGTACAGCATTGCAGTCACTGCCCGAGAGACCCCAGACAGGGCTCTGATAGTGCACTGGACTCAGCATCGTGATGTGCACAACAGCAGACGGCTGGGAGCCAATCCAGCCAACCCCAGTGCTGCTCCTCCACGCTTACCCTTCTCCAGGGTCACACAGGAGGATCTGTCCTTCTTCAGAGCGCTACTGCCTGGAAGAACCATCACTGATCCAGACCTGCTGAAGTCCAGTAATGTAGACTGGCTTAAGACTGTACAAGgTAGTAGTGATGTTCTCCTGAGACCCAAAACAACAGAAGAGGTCTCTCAGATTCTCAGGTACTGTAATGAGCGAAATCTGGCAGTGTGTCCGCAGGGAGGAAACACAGGTCTGGTGGGAGGAAGTGTGCCTGTGTTTGATGAAATCATCCTTTCCACTTCTCTAATGAACCAAGTCTTCGCCTTCGACAATATCTCAGGTATCCTCACTTGTCAGGCAGGCTGTGTGTTGGAAAACCTGTCTCACTATCTAGAGGAGAGAGACTTCATCATGCCGCTGGATCTCGGAGCAAAGGGAAGCTGtcatattggagggaatgtgtcTACTAATGCAGGTGGTCTCAGACTTCTGCGCTATGGCTCACTTAGAGGGACGGTTCTGGGCCTGGAAGTGGTTTTGGCAGATGGACGTGTTTTGAACTGTCTGGCCACACTTCGCAAGGACAACACGGGTTATGACCTCAAGCAGCTTTTCATTGGCTCAGAAGGGACATTAGGAGTCATTACTGCTGTTTCCATCCTGTGCCCCCGCAAGCCTAAAGCTGTCAATGTAGCCTTTTTAGggtgctccagtttccagcAACTACTGGAAACATTTCAGTGTTGTAGAGGGATGCTGGGAGAGATCCTGTCTGCTTTTGAGTTTTTAGATGCCTCCTGTATGAACCTTCTGGAGAAGCATCTGAAACTCACCAACCCCATCACAGAATGTCCCTTTTACATTGTCATTGAGACTGCTGGATCCAACGCCACCCATGATGAAGAAAAGCTACATCAATTCCTTGAAGAAGTCATGACATCATCTCTGGTCACTGACGGGACAGTTGCGACAGAGGCAACAAAAATCAAGGCATTGTGGTCTTTGAGGGAGAGAGTCACAGAAGCTCTGACGCATGAAGGATACACCTACAAATATGACATCTCCCTTCCTGTGGAGAAGATCTATGATTTAGTCCAAGATATGAGGAGGCACCTTGGAGGCATGGCCAAGAATGTCGTCGGCTATGGACACGTTGGGGATGGAAATCTTCATTTAAACATCACTTCCCCCTCTAAAGACTTTGCTCTGCTGGCTGCCATTGAGCCATATGTGTATGAGTGGACGTCTCAGTGGAAAGGCAGCATCAGTGCAGAGCATGGGCTCGGTCTGAAGAAGAGAAACTACATCTACTACAGTAAACCCTCAGAGGCAGTCGCTCTCATGGGCAGCATTAAAGCCATGCTGGATCCTAAAGGCATCCTCAACCCTTACAAAACACTGCCAGACAACATAAACTAATGGTTTCATGGTGATCAGGATTTCTATGAAAATTAAGGATGTCAATTTACCACAGTATTATTGATGTAGTATGTTTAATGTATTAAATGGGCTATAATAGATTCCAAGTACTTAATTTGTACACAATTGT

Function

symbol description
d2hgdh Predicted to enable FAD binding activity and limonene-1,2-diol dehydrogenase activity. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in D-2-hydroxyglutaric aciduria 1. Orthologous to human D2HGDH (D-2-hydroxyglutarate dehydrogenase).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0071949 FAD binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-482 Predicted to enable FAD binding activity and limonene-1,2-diol dehydrogenase activity. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in D-2-hydroxyglutaric aciduria 1. Orthologous to human D2HGDH (D-2-hydroxyglutarate dehydrogenase).

Ensembl:

ensembl_id ENSDARG00000060210

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032802 True 1833 mRNA 0.47 10 41546271 41562868

Neighbor

gene id symbol gene type direction distance location
XLOC_016718 NA coding downstream 27931 41504477 ~ 41518340 (-)
XLOC_016714 NA coding downstream 98380 41162103 ~ 41447891 (-)
XLOC_016717 BX890557.1 coding downstream 124549 41421606 ~ 41421722 (-)
XLOC_016716 NA coding downstream 310739 41233349 ~ 41235532 (-)
XLOC_016715 LO018352.1 coding downstream 334177 41211978 ~ 41212094 (-)
XLOC_016720 znf622 coding upstream 205 41563073 ~ 41571454 (-)
XLOC_016721 zgc:110158 coding upstream 14639 41577507 ~ 41723487 (-)
XLOC_016722 NA coding upstream 188972 41751840 ~ 41772041 (-)
XLOC_016723 keap1a coding upstream 272157 41835025 ~ 41861040 (-)
XLOC_016724 ebi3 coding upstream 373735 41936603 ~ 41942666 (-)
XLOC_016725 BX663525.1 non-coding upstream 383107 41945975 ~ 41946896 (-)
XLOC_016727 BX663525.2 non-coding upstream 409669 41972537 ~ 41983756 (-)
XLOC_016743 NA non-coding upstream 1033056 42595924 ~ 42597593 (-)
XLOC_016745 NA non-coding upstream 1103034 42665902 ~ 42748662 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000190_00259998_00265222 D2HGDH coding CI01000190 null 259998 ~ 265304 (+)