XLOC_016713 (hs6st1a)


Basic Information

Item Value
gene id XLOC_016713
gene name hs6st1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 40901997 ~ 41124013 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032796
ATGAACCTCCTCACTGGAAGGAACATGGTTGAGAGGAGCAGTAAATTTCTGTTCATCGTTGTCGGCTCGGTTCTGTTCATGCTGATTTTGTATCAGTACGTGGCTCCGGGGATGATGAACTTCGGCTCTCCGCACGGCTACATGCTGGAAGACGATGCGGATCTCTTCCCGACTCCTGATCCCCATTACGTCAAGAAATTCTATTTCCCCATCAGGGATCTGGAGCGGACCGTGGATTTTGAAATCAAGGGGGATGATGTGATCGTGTTCCTCCACATCCAGAAGACCGGTGGGACCACGTTCGGGAGGCACCTGGTCCAGAACGTCAGGCTGGAGGTTCCGTGCGACTGTAGACCGGGACAGAAGAAGTGTACCTGTTACCGACCCAATAGGAAAGAAACCTGGCTCTTCTCACGGTTCTCCACCGGTTGGAGTTGTGGCTTACACGCGGACTGGACCGAACTGACCAACTGCGTACCGGGGGTTTTGAACAAAAAGGAGAGCAGGATGAAAAATCAAAGGAAGTTCTACTACATCACACTCTTACGGGACCCTGTGTCCCGCTACCTGAGCGAGTGGAGACACGTACAGCGAGGGGCCACATGGAAAACCTCCCTGCACATGTGCGATGGACGAACACCTACGCCGGAGGAGTTACCCCCCTGCTACGAGGGCACCGACTGGTCAGGGTGCACGTTACAGCAGTTCATGGACTGTCCATACAACCTGGCGAATAACCGACAGGTGCGCATGCTGGCCGACCTCAGCCTGGTGGGCTGCTACAACATGTCCTTTATCCCGGAAAAGAAGCGGGCGCAGGTGCTACTTGAGTCAGCCAAGAAGAACCTACGAGACATGGCCTTCTTTGGCTTGACGGAGTTCCAGCGGAAAACGCAGTATTTGTTCGAACGGACCTTCCGTCTCAAGTTCATCCGGCCCTTCATGCAGTATAACAGCACGCGGGCTGCCGGTGTTGACCTCGATAATGACACGATACAGCGTATCGAGGAGCTCAACGACCTGGACATGCAGTTATACGACTACGCCAGGGATCTTTTCCAGCAGCGCTACATGTACAAGCGGCAACTGGAGCGAAGAGAGCAGCGCCTAAAGAACCAGCCTCTTTTTCCCTTTCGGCGGACGTCCAGTTCCGACTCTACTTTCAGGGATGACGCGCCAGAGTCCGAAGGATCTCGATTGCCCACGGAGGACTATATGAATCACATTATCAACCGCTGGTAG
>TCONS_00033909
ATGAACCTCCTCACTGGAAGGAACATGGTTGAGAGGAGCAGTAAATTTCTGTTCATCGTTGTCGGCTCGGTTCTGTTCATGCTGATTTTGTATCAGTACGTGGCTCCGGGGATGATGAACTTCGGCTCTCCGCACGGCTACATGCTGGAAGACGATGCGGATCTCTTCCCGACTCCTGATCCCCATTACGTCAAGAAATTCTATTTCCCCATCAGGGATCTGGAGCGGACCGTGGATTTTGAAATCAAGGGGGATGATGTGATCGTGTTCCTCCACATCCAGAAGACCGGTGGGACCACGTTCGGGAGGCACCTGGTCCAGAACGTCAGGCTGGAGGTTCCGTGCGACTGTAGACCGGGACAGAAGAAGTGTACCTGTTACCGACCCAATAGGAAAGAAACCTGGCTCTTCTCACGGTTCTCCACCGGTTGGAGTTGTGGCTTACACGCGGACTGGACCGAACTGACCAACTGCGTACCGGGGGTTTTGAACAAAAAGGAGAGCAGGATGAAAAATCAAAGGTAA
>TCONS_00032797
ACAGCGATGTGTCGAGGACTTTAAACACACCGTGTCATACAGTGGTGAAAGGAGGGAGACCGCGCCGTGCTGGATCCTATACCGCAACACTTCTGATGCAATGAGTCCAACCTGACCCAATGCGTCTGACGACTGACTTTCAGCGCGCGATGCTCTGACTGCCGAGTGTTTATATGGAGACACCCTAAAAAACAGTCAACCGGGAAATGGTAACACATGAACCTCCTCACTGGAAGGAACATGGTTGAGAGGAGCAGTAAATTTCTGTTCATCGTTGTCGGCTCGGTTCTGTTCATGCTGATTTTGTATCAGTACGTGGCTCCGGGGATGATGAACTTCGGCTCTCCGCACGGCTACATGCTGGAAGACGATGCGGATCTCTTCCCGACTCCTGATCCCCATTACGTCAAGAAATTCTATTTCCCCATCAGGGATCTGGAGCGGACCGTGGATTTTGAAATCAAGGGGGATGATGTGATCGTGTTCCTCCACATCCAGAAGACCGGTGGGACCACGTTCGGGAGGCACCTGGTCCAGAACGTCAGGCTGGAGGTTCCGTGCGACTGTAGACCGGGACAGAAGAAGTGTACCTGTTACCGACCCAATAGGAAAGAAACCTGGCTCTTCTCACGGTTCTCCACCGGTTGGAGTTGTGGCTTACACGCGGACTGGACCGAACTGACCAACTGCGTACCGGGGGTTTTGAACAAAAAGGAGAGCAGGATGAAAAATCAAAG

Function

symbol description
hs6st1a Enables heparan sulfate 6-O-sulfotransferase activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process, enzymatic modification. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including immature eye; nervous system; neural keel; neural tube; and polster. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 15 with or without anosmia. Orthologous to human HS6ST1 (heparan sulfate 6-O-sulfotransferase 1).

GO:

id name namespace
GO:0015015 heparan sulfate proteoglycan biosynthetic process, enzymatic modification biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0017095 heparan sulfate 6-O-sulfotransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050524-1 Enables heparan sulfate 6-O-sulfotransferase activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process, enzymatic modification. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including immature eye; nervous system; neural keel; neural tube; and polster. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 15 with or without anosmia. Orthologous to human HS6ST1 (heparan sulfate 6-O-sulfotransferase 1).

Ensembl:

ensembl_id ENSDARG00000054754

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032796 False 1242 mRNA 0.54 2 40901997 41123797
TCONS_00033909 False 525 lncRNA 0.52 2 41033519 41123797
TCONS_00032797 True 737 mRNA 0.52 1 41123277 41124013

Neighbor

gene id symbol gene type direction distance location
XLOC_016712 uggt1 coding downstream 11733 40830768 ~ 40890264 (-)
XLOC_016711 BX005042.1 coding downstream 97029 40786665 ~ 40804968 (-)
XLOC_016710 NA coding downstream 132193 40766601 ~ 40769804 (-)
XLOC_016709 NA coding downstream 189734 40622954 ~ 40712263 (-)
XLOC_016708 CR931819.1 coding downstream 306503 40595375 ~ 40595494 (-)
XLOC_016714 NA coding upstream 38090 41162103 ~ 41447891 (-)
XLOC_016715 LO018352.1 coding upstream 87965 41211978 ~ 41212094 (-)
XLOC_016716 NA coding upstream 109336 41233349 ~ 41235532 (-)
XLOC_016717 BX890557.1 coding upstream 297593 41421606 ~ 41421722 (-)
XLOC_016718 NA coding upstream 380464 41504477 ~ 41518340 (-)
XLOC_016707 CR931819.2 non-coding downstream 356936 40544946 ~ 40545061 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000190_00502934_00503458 NA coding CI01000190 null 501376 ~ 503875 (+)