RNA id: TCONS_00033909


Basic Information

Item Value
RNA id TCONS_00033909
length 525
lncRNA type sense_over
GC content 0.52
exon number 2
gene id XLOC_016713
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 40901997 ~ 41124013 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAACCTCCTCACTGGAAGGAACATGGTTGAGAGGAGCAGTAAATTTCTGTTCATCGTTGTCGGCTCGGTTCTGTTCATGCTGATTTTGTATCAGTACGTGGCTCCGGGGATGATGAACTTCGGCTCTCCGCACGGCTACATGCTGGAAGACGATGCGGATCTCTTCCCGACTCCTGATCCCCATTACGTCAAGAAATTCTATTTCCCCATCAGGGATCTGGAGCGGACCGTGGATTTTGAAATCAAGGGGGATGATGTGATCGTGTTCCTCCACATCCAGAAGACCGGTGGGACCACGTTCGGGAGGCACCTGGTCCAGAACGTCAGGCTGGAGGTTCCGTGCGACTGTAGACCGGGACAGAAGAAGTGTACCTGTTACCGACCCAATAGGAAAGAAACCTGGCTCTTCTCACGGTTCTCCACCGGTTGGAGTTGTGGCTTACACGCGGACTGGACCGAACTGACCAACTGCGTACCGGGGGTTTTGAACAAAAAGGAGAGCAGGATGAAAAATCAAAGGTAA

Function

GO:

id name namespace
GO:0015015 heparan sulfate proteoglycan biosynthetic process, enzymatic modification biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0017095 heparan sulfate 6-O-sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032791 lncRNA downstream 228551 40786665 ~ 40804968 (-) True XLOC_016711
TCONS_00033389 lncRNA downstream 263715 40766601 ~ 40769804 (-) False XLOC_016710
TCONS_00033908 lncRNA downstream 263735 40767225 ~ 40769784 (-) True XLOC_016710
TCONS_00033906 lncRNA downstream 321256 40622954 ~ 40712263 (-) False XLOC_016709
TCONS_00033390 lncRNA upstream 38306 41162103 ~ 41447837 (-) False XLOC_016714
TCONS_00032798 lncRNA upstream 38306 41162103 ~ 41447837 (-) False XLOC_016714
TCONS_00033391 lncRNA upstream 38461 41162258 ~ 41447837 (-) False XLOC_016714
TCONS_00033910 lncRNA upstream 38588 41162385 ~ 41272468 (-) False XLOC_016714
TCONS_00033911 lncRNA upstream 109552 41233349 ~ 41235532 (-) True XLOC_016716
TCONS_00032794 mRNA downstream 143255 40830768 ~ 40890264 (-) False XLOC_016712
TCONS_00032795 mRNA downstream 143515 40832974 ~ 40890004 (-) True XLOC_016712
TCONS_00032793 mRNA downstream 144054 40830768 ~ 40889465 (-) False XLOC_016712
TCONS_00032792 mRNA downstream 144054 40830768 ~ 40889465 (-) False XLOC_016712
TCONS_00032784 mRNA downstream 841916 40181633 ~ 40191603 (-) True XLOC_016702
TCONS_00032801 mRNA upstream 380955 41504752 ~ 41518340 (-) True XLOC_016718
TCONS_00032802 mRNA upstream 422474 41546271 ~ 41562868 (-) True XLOC_016719
TCONS_00032803 mRNA upstream 439276 41563073 ~ 41571454 (-) True XLOC_016720
TCONS_00032804 mRNA upstream 453710 41577507 ~ 41620112 (-) False XLOC_016721
TCONS_00032805 mRNA upstream 456992 41580789 ~ 41620112 (-) False XLOC_016721
TCONS_00032788 other downstream 438025 40595375 ~ 40595494 (-) True XLOC_016708
TCONS_00032787 other downstream 488458 40544946 ~ 40545061 (-) True XLOC_016707
TCONS_00032779 other downstream 963667 40067808 ~ 40069852 (-) False XLOC_016701
TCONS_00032777 other downstream 1006897 39926961 ~ 40026622 (-) False XLOC_016700
TCONS_00032799 other upstream 88181 41211978 ~ 41212094 (-) True XLOC_016715
TCONS_00032800 other upstream 297809 41421606 ~ 41421722 (-) True XLOC_016717
TCONS_00032808 other upstream 493410 41617207 ~ 41620112 (-) True XLOC_016721
TCONS_00032811 other upstream 822178 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032833 other upstream 1248212 42372009 ~ 42375109 (-) True XLOC_016738

Expression Profile

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