RNA id: TCONS_00032809


Basic Information

Item Value
RNA id TCONS_00032809
length 2868
RNA type mRNA
GC content 0.48
exon number 7
gene id XLOC_016723
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 41835025 ~ 41861040 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGCGAGTACGCGCCTGCTTCACAGTCAGTTGACAGCTGGAAGGCAGAGAAGCTTCGCGCATAACAAACTTTCgattatgtttttagttttttgcttTGAGGTTTTACGCGCCAAAAAGAGCAAGGTTTAGTTTGTAAATGCGAGCGGAGGGCATTCCCCTCCTCGAGTATCAAATTCTTGTATTAATTCGAGCAGGATCAGTCTTTGTGTAAACAGTCTATGTTTACAGGACGTAAGTGGAAGTAAGTGAAGTACTGTCACCGGTTCCTGATATAAGggtGAAAAGAGCACATCCTTCTCAGAGGATAATAACCTTTTGGAAGAAAagaatattgcatttttattgcaTGCGCTTACAATAATTTGTAAGACAACTTCACTTTTACAATCTCAAGAGGATAAAATTGGATCTGTAATTGATGAAAAGTAGCTTTCGTTTGATTTAAAGGAAGCAACGCTTTAATATCCTTTTACACTGTGGATATTTCAACAATGCCAACCTGGCTGGAGACAGAATCTTGTTATAGTGGACTTCTAACCAGACAGAAGAAACATGGCTCTCTGTCCTTAAACGATAATCAGTTGTGCCTGTATTTCTTCATGGCACGTGGATGGGTATAGACATTGTTCTGCTGCATTTGCCATTCATTTTCTACTCATAACAATTGACAATCAAGCTCTTGGAGAATGATATGTCCAAGAAAGAAGAGGCCCATCAAAGATGAGGATTTCTCCGCCATCGTGGTCCCCTCCATGAGGGGTCACGGTTACTTGGATTACACGGTTGAAAGTCATCCGTCTAAAGCTCTGCAGAACATGGACGAGCTGCGTCATCATGAAATGCTGTGTGATCTGGTTCTGCATGTCACATACAAGGACAAGATAGTGGATTTTAAGGTGCATAAGCTGGTTCTGGCCGCCTCCAGTCCTTACTTCAAAGCCATGTTCACCAGCAACTTCAAGGAGTGCCACGCGTCGGAAGTCACCCTTCGAGACGTTTGTCCTCAAGTCATCAGCCGTCTCATTGACTTTGCCTACACCTCGCGCATCACAGTTGGCGAGACCTGCGTTCTTCACGTCCTCTTGACCGCCATGCGCTACCAAATGGAAGAAGTGGCCAAAGCCTGCTGCGATTTCCTCATGAAGAACCTGGAGCCATCCAATGTCATCGGCATCTCGAGATTCGCTGAGGAGATCGGCTGCACTGACCTACACCTTCGCACCAGAGAGTATATCAACACTCACTTCAATGAGGTAACCAAAGAAGAAGAGTTCTTCAGCTTGTCCCATTGCCAGCTGCTTGAGCTGATCAGTCAGGACAGTCTGAAGGTGCTCTGCGAGAGCGAGGTCTACAAGGCCTGCATAGACTGGGTACGCTGGGACGCAGAGAGCCGTGCGCAGTACTTCCATGCCCTCCTCAATGCCGTCCACATCTACGCCCTTCCACCCACTTTCCTCAAAAGACAACTGCAGTCCTGCCCCATCCTCAGCAAGGCCAACTCCTGCAAAGACTTCCTATCAAAGATCTTCCATGAAATGGCTCTCCGAAAACCCCTGCCGCCAACACCTCATCGTGGGACGCAGCTCATTTACATAGCGGGAGGTTACAAGCAACACTCTCTGGACACCTTGGAGGCCTTCGACCCGCACAAGAACGTCTGGCTCAAACTAGGTAGCATGATGTCTCCTTGTAGCGGGCTTGGGGCGTGTGTTTTGTTCGGGCTTCTTTATACAGTCGGCGGACGCAATCTCTCCCTGCAGAACAACACAGAGTCTGGATCTTTGTCCTGCTACAACCCCATGACTAACCAGTGGACCCAGCTGGCTCCGCTCAACACACCCAGAAACCGAGTGGGCGTCGGGGTCATTGATGGGAGCATTTATGCTGTTGGGGGTTCACATGCCTCTACGCATCACAACAGCGTCGAGAGgtatGACCCAGAAACAAACCGCTGGACGTTTGTGGCCCCTATGTCAGTGGCGCGACTGGGGGCCGGTGTGGCGGCATGTGGAGGTTGCCTGTATGTGGTAGGAGGGTTTGACGGGGACAACCGGTGGAACACAGTGGAGCGATACCAACCAGACACCAACACCTGGCAGCATGTGGCACCTATGAACACAGTGCGCAGCGGGCTGGGGGTGGTGTGTATGGATAACTACCTCTATGCAGTTGGAGGCTATGATGGACAAACCCAACTCAAAACCATGGAGAGATATAACATCACTCGAGATGTGTGGGAACCCATGGCTTCGATGAACCACTGCCGCAGTGCACATGGAGTCTCAGTCTACCAGTGCAAGATTTTTGTGTTAGGTGGATTTAACCAAGGTGGTTTCCTGTCCAGTGTGGAGTGCTACTGTCCCGCCAGTAATGTATGGACGCTTGTAACAGATATGCCCGTGGGACGCAGTGGAATGGGTGTAGCCGTGACCATGGAACCGTGTCCTGGTATCCTGccagaggaggaggaagaagtgGACGAGGAGATGTGACATTTCATCGTGTGCCATTTTAAAGACAGCACATACTGCAATTCCCTTCAAACTTGATTGTGCATGCACGAGATGCCAATGAGGACAAATGTATGTAATTTCAGAttgattttaaagtttatttgGATCAATCCTCCCTCAGCTACAAAGTGTGTGCGATTTAGAGAGAGCAACATGGCTAATCACTGGACTAATGAAGTGGTGATCACTGTAGCAGGACTTTAAATGAATATCCTGTGACTGAcgcacagacacacgcacaaTTGTTTTGTCGAACTTCTGAATGTGTAATTTTGTGAGCTTGTTATAAATACTTTTCACATCTGTAAATGCACTGTTTAATGTGCACACCTGATAAAACACTCAAATCGCA

Function

GO:

id name namespace
GO:0071379 cellular response to prostaglandin stimulus biological_process
GO:0016567 protein ubiquitination biological_process
GO:0010506 regulation of autophagy biological_process
GO:0034599 cellular response to oxidative stress biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0016234 inclusion body cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-556 Involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Acts upstream of or within cellular response to prostaglandin stimulus and cellular response to xenobiotic stimulus. Predicted to be located in cytoplasm and inclusion body. Is expressed in several structures, including digestive system; eye; gill; heart; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in gallbladder cancer. Orthologous to human KEAP1 (kelch like ECH associated protein 1).

Ensembl:

ensembl_id ENSDART00000045763

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033394 lncRNA downstream 62984 41751840 ~ 41772041 (-) False XLOC_016722
TCONS_00033913 lncRNA downstream 63835 41751951 ~ 41771190 (-) True XLOC_016722
TCONS_00033393 lncRNA downstream 322699 41504477 ~ 41512326 (-) False XLOC_016718
TCONS_00033912 lncRNA downstream 387134 41441577 ~ 41447891 (-) True XLOC_016714
TCONS_00033392 lncRNA downstream 387188 41266836 ~ 41447837 (-) False XLOC_016714
TCONS_00032813 lncRNA upstream 111497 41972537 ~ 41983756 (-) True XLOC_016727
TCONS_00032815 lncRNA upstream 166417 42027457 ~ 42030255 (-) False XLOC_016728
TCONS_00033914 lncRNA upstream 166417 42027457 ~ 42030986 (-) False XLOC_016728
TCONS_00032816 lncRNA upstream 168511 42029551 ~ 42030986 (-) False XLOC_016728
TCONS_00033915 lncRNA upstream 734884 42595924 ~ 42596530 (-) False XLOC_016743
TCONS_00032807 mRNA downstream 111538 41583176 ~ 41723487 (-) False XLOC_016721
TCONS_00032806 mRNA downstream 111860 41582845 ~ 41723165 (-) False XLOC_016721
TCONS_00032804 mRNA downstream 214913 41577507 ~ 41620112 (-) False XLOC_016721
TCONS_00032805 mRNA downstream 214913 41580789 ~ 41620112 (-) False XLOC_016721
TCONS_00032803 mRNA downstream 263571 41563073 ~ 41571454 (-) True XLOC_016720
TCONS_00032810 mRNA upstream 75563 41936603 ~ 41942666 (-) True XLOC_016724
TCONS_00032812 mRNA upstream 88146 41949186 ~ 41964402 (-) True XLOC_016726
TCONS_00032814 mRNA upstream 159875 42020915 ~ 42035250 (-) False XLOC_016728
TCONS_00032817 mRNA upstream 169498 42030538 ~ 42035307 (-) True XLOC_016728
TCONS_00032818 mRNA upstream 177996 42039036 ~ 42065069 (-) True XLOC_016729
TCONS_00032808 other downstream 214913 41617207 ~ 41620112 (-) True XLOC_016721
TCONS_00032800 other downstream 413303 41421606 ~ 41421722 (-) True XLOC_016717
TCONS_00032799 other downstream 622931 41211978 ~ 41212094 (-) True XLOC_016715
TCONS_00032788 other downstream 1239531 40595375 ~ 40595494 (-) True XLOC_016708
TCONS_00032787 other downstream 1289964 40544946 ~ 40545061 (-) True XLOC_016707
TCONS_00032811 other upstream 84935 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032833 other upstream 510969 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032837 other upstream 543021 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032848 other upstream 811810 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032856 other upstream 1101188 42962228 ~ 42962344 (-) True XLOC_016753

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000190_00133955_00144842.mRNA True 4207 mRNA 0.45 6 CI01000190 132882 ~ 146173 (+)
bowfin (Amia calva) AMCG00005865 True 3038 mRNA 0.60 10 CM030142.1 11495141 ~ 11507437 (+)