XLOC_016780 (atp1a2a)


Basic Information

Item Value
gene id XLOC_016780
gene name atp1a2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 44203075 ~ 44255537 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032896
GAGAAGTGGTATGTTACCTCCAAAAAAAGCCACCAGTGTCTTCCACACGTGTGAGGGAAGAGTGGGAGAAATCCGGGCACCGGCTCATTATCAGCGAACATGGGGAAagggTACGGACATGAAAGCAGCCCGGAGGCGGCACCAACGGGGGGAAAGAGGAAGAAGAAGGATAAAGATTTAGATGAGCTGAAGAAAGAGGTGTCACTGgatgATCATAAGCTGACTCTGGATGAGCTCAGTACTCGTTATGGAGTTGACCTTGCCAGAGGTTTGACCCATAAGAGAGCGATGGAAATCCTGGCGCGTGACGGTCCAAATGCGCTGACCCCTCCGCCCACCACCCCGGAGTGGGTGAAGTTCTGCAAGCAGCTGTTTGGAGGATTCTCCATCCTGCTCTGGATCGGTGCCATCCTCTGCTTTCTGGCCTACAGTATTCAGGCAGCCACAGAGGACGAGCCTGTCAATGACAATTTGTATCTGGGTGTGGTTCTGTCTGCTGTGGTCATCATAACCGGCTGCTTCTCATATTATCAAGAAGCCAAAAGCTCTCGGATCATGGACTCCTTCAAAAACATGGTGCCTCAGCAAGCTTTGGTGATCCGGGATGGGGAGAAGCTTCAGATAAATGCAGAGGAGGTGGTTCAGGGAGACCTGGTGGAGATTAAGGGTGGAGATCGAGTCCCCGCTGACCTGCGCATCATCTCCTCCAGTGGCTGCAAGGTTGATAACTCGTCTCTTACTGGAGAATCTGAACCTCAGACTCGATCTCCAGAGTTTACTCATGAAAACCCCCTGGAGACCCGAAACATCAGCTTCTTCTCCACCAACTGTGTGGAAGGTACAGCCCACGGCATCGTGATTGCTACAGGCGATCATACAGTGATGGGCCGCATTGCGACTTTGGCATCTGGTCTGGAAGTGGGTCAAACTCCCATCAACATGGAGATCGAGCACTTCATTCACATCATCACAGGGGTGGCCATCTTTCTAGGCATGTCCTTCTTCATCCTGTCCATCATTCTGGGCTACACCTGGCTGGAGGCCGTTATCTTCCTCATCGGCATCATTGTCGCTAATGTCCCTGAGGGTCTGCTGGCTACTGTCACAGTCTGCTTGACTCTGACAGCAAAGCGTATGGCTCGCAAAAACTGCCTGGTGAAGAATCTGGAAGCTGTGGAGACTTTGGGTTCCACCTCCACCATCTGCTCGGATAAAACTGGGACCCTGACTCAGAACCGGATGACCGTCGCTCACATGTGGTTTGACAACCAGATTCACGAGGCCGACACCACTGAGGATCAATCAGGTTGTGACTTTGATAAAAGCTCTCCCACCTGGTTCTCTCTGTCTCGAGTGGGGGGGCTTTGTAATCGTGCTGTTTTCAAAGCAGGACAAGAGGAGATTCCTATACGCACGagGGATACAGCAGGAGACGCCTCAGAATCTGCTCTGTTGAAGTGTGTGGAGATCTTGTCTGGCAATGTTGAGACTCTCAGAGAGAACAACCGGAAAGTGGCCGAAATTCCATTCAATTCAACTAACAAATACCAGCTGTCTATTCACGAGTTAGAAGACAGTCCTACTGGACACCTGCTGGTGATGAAAGGCGCTCCAGAGAGAATTTTGGACAGGTGCAGTACTATAATGATCAACGGAGAGGAATTCCCAATAGACGATGACTGGATGGATGCATTTCAGGGAGCCTACATGGAGCTGGGAGGACTGGGAGAAAGAGTTCTGGGTTTCTGCCACctgtttctctctccctctcagtTTCCAAGAGGGTTTGAGTTTGATTGTGACGACGTGAATTTTCCAGTCAATCAGCTCTGTTTCCTGGGCCTAATCTCCATGATCGATCCTCCCCGAGCTGCAGTGCCAGATGCTGTGGGCAAATGCCGTTCTGCGGGTATTAAgGTCATAATGGTGACGGGTGACCATCCTATAACTGCCAAGGCCATTGCTAAAGGTGTTGGCATTATCTCTGAGGGCAATGAAACGGTGGAGGATATCGCTGAAAGACTTAATATACCACTGAGCCAAGTCAATCCacgaGAGGCTAAAGCCTGTGTGGTCCACGGTTCAGACCTGAAGGACATGAGCGCCGAGTATCTGGATGATATTCTGAGGAACCACACGGAGATTGTGTTTGCTCGCACTTCACCTCAGCAAAAGCTCATCATCGTGGAGGGCTGCCAGAGACAGGGTGCCATAGTGGCAGTGACAGGTGACGGGGTGAACGACTCTCCAGCTCTGAAGAAGGCTGACATCGGCGTTGCCATGGGAATCACAGGCTCAGACGTCTCCAAGCAAGCAGCTGACATGATCCTGCTGGACGACAACTTTGCTTCAATCGTTACAGGAGTGGAAGAGGGTCGTCTGATCTTCGACAACCTGAAGAAGTCGATTGCGTACACGCTGACCAGTAATATCCCAGAGATCACACCCTTTCTGCTCTTCATCATCGCCAGTGTTCCTCTGCCTCTGGGCACCGTCACCATCCTCTGCATCGACCTTGGCACTGACATGgtTCCTGCAATCTCTCTGGCGTACGAGTCGGCAGAGAGTGACATTATGAAGCGTCAGCCCCGAAACCCCAAAACTGACAAGCTGGTGAATGAAAGGCTCATCAGCATGGCTTACGGACAGATCGgtATGATCCAGGCTCTGGGAGGTTTCTTCACCTATTTTGTGATAATGGCTGAAAATGGATTTCTGCCTCAAACGCTGCTGGGAATTCGACTGGATTGGGATGATCGTACAGTTAATGACCTGGAGGACGGCTATGGCCAGCAATGGaCGTACGAGCAGCGTAAGATCATCGAGTTCACCTGTCACACGTCGTTCTTCGTCAGCAttgtggtggtgcagtgggccGATCTCATCATCTGCAAGACACGCAGGAACTCCGTCTTCCAGCAGGGCATGAAGAATAGGATTCTCATTTTCGGCCTGTTTGCCGAGACGGCTCTAGCAGCCTTCCTGTCCTACTGCCCCGGTATGGACGTTGCCCTGAGGATGTACCCACTCAAGATTATGTGGTGGTTCTGTGCTTTCCCGTACAGTCTGCTTATCTTTGTGTATGATGAGATCCGTAAGTTTATCCTGCGGAGAAATCCAGGAGGCTGGGTGGAAATAGAGACCTACTATTAACAACAATATGCAATCTCTGTGCATGACTGccagtgtacgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaagacatGAAGGTAATGAGACAAATGAAGGATCAGACAATCGTGTCATTTATCATGTAAGACTGAATGTATGCGactgtgtgtgcgagtgtgtaaaTCCACCGTGCATAATCTGTTTACATGATGTATCCTGAATATCGTTATGCTCAATAATGTGATGATTTAATAGCCGAATAGTGTTCAGGATCATTACATTTCTACTGATTTGATTTTTGCTGTGAGTTTATTACTTTTCGCCTGGTTGTAAGCTTTCATTTAGAGTTCATTTTCTTTACGTTGGCACTTGTGTGTGAAATGTAGTACACTGCTCATATATTTCTTTTCAATTCGTCTTTATGTActtcttgttttttgtttgtttttttggtggtGCTAGTTCATTAAACTTTTAATGTAATATTGCTATCATAATTATTTgggttttgtttaaatacatctaaaaacaaaacaaaataataaaatgcaataaaaagtgtgtgaatatagcccaTTAGTTTGACTTTTATGTTGGACTTGGCATTTTCTATATAATTCACTGTGCAACATCAACTGtaaagataaaaatgaaataaaaattgtaatggCAGAA
>TCONS_00032897
GAGAAGTGGTATGTTACCTCCAAAAAAAGCCACCAGTGTCTTCCACACGTGTGAGGGAAGAGTGGGAGAAATCCGGGCACCGGCTCATTATCAGCGAACATGGGGAAagggTACGGACATGAAAGCAGCCCGGAGGCGGCACCAACGGGGGGAAAGAGGAAGAAGAAGGATAAAGATTTAGATGAGCTGAAGAAAGAGGTGTCACTGgatgATCATAAGCTGACTCTGGATGAGCTCAGTACTCGTTATGGAGTTGACCTTGCCAGAGGTTTGACCCATAAGAGAGCGATGGAAATCCTGGCGCGTGACGGTCCAAATGCGCTGACCCCTCCGCCCACCACCCCGGAGTGGGTGAAGTTCTGCAAGCAGCTGTTTGGAGGATTCTCCATCCTGCTCTGGATCGGTGCCATCCTCTGCTTTCTGGCCTACAGTATTCAGGCAGCCACAGAGGACGAGCCTGTCAATGACAATTTGTATCTGGGTGTGGTTCTGTCTGCTGTGGTCATCATAACCGGCTGCTTCTCATATTATCAAGAAGCCAAAAGCTCTCGGATCATGGACTCCTTCAAAAACATGGTGCCTCAGCAAGCTTTGGTGATCCGGGATGGGGAGAAGCTTCAGATAAATGCAGAGGAGGTGGTTCAGGGAGACCTGGTGGAGATTAAGGGTGGAGATCGAGTCCCCGCTGACCTGCGCATCATCTCCTCCAGTGGCTGCAAGGTTGATAACTCGTCTCTTACTGGAGAATCTGAACCTCAGACTCGATCTCCAGAGTTTACTCATGAAAACCCCCTGGAGACCCGAAACATCAGCTTCTTCTCCACCAACTGTGTGGAAGGTACAGCCCACGGCATCGTGATTGCTACAGGCGATCATACAGTGATGGGCCGCATTGCGACTTTGGCATCTGGTCTGGAAGTGGGTCAAACTCCCATCAACATGGAGATCGAGCACTTCATTCACATCATCACAGGGGTGGCCATCTTTCTAGGCATGTCCTTCTTCATCCTGTCCATCATTCTGGGCTACACCTGGCTGGAGGCCGTTATCTTCCTCATCGGCATCATTGTCGCTAATGTCCCTGAGGGTCTGCTGGCTACTGTCACAGTCTGCTTGACTCTGACAGCAAAGCGTATGGCTCGCAAAAACTGCCTGGTGAAGAATCTGGAAGCTGTGGAGACTTTGGGTTCCACCTCCACCATCTGCTCGGATAAAACTGGGACCCTGACTCAGAACCGGATGACCGTCGCTCACATGTGGTTTGACAACCAGATTCACGAGGCCGACACCACTGAGGATCAATCAGGTTGTGACTTTGATAAAAGCTCTCCCACCTGGTTCTCTCTGTCTCGAGTGGGGGGGCTTTGTAATCGTGCTGTTTTCAAAGCAGGACAAGAGGAGATTCCTATACGCACGagGGATACAGCAGGAGACGCCTCAGAATCTGCTCTGTTGAAGTGTGTGGAGATCTTGTCTGGCAATGTTGAGACTCTCAGAGAGAACAACCGGAAAGTGGCCGAAATTCCATTCAATTCAACTAACAAATACCAGCTGTCTATTCACGAGTTAGAAGACAGTCCTACTGGACACCTGCTGGTGATGAAAGGCGCTCCAGAGAGAATTTTGGACAGGTGCAGTACTATAATGATCAACGGAGAGGAATTCCCAATAGACGATGACTGGATGGATGCATTTCAGGGAGCCTACATGGAGCTGGGAGGACTGGGAGAAAGAGTTCTGGGTTTCTGCCACctgtttctctctccctctcagtTTCCAAGAGGGTTTGAGTTTGATTGTGACGACGTGAATTTTCCAGTCAATCAGCTCTGTTTCCTGGGCCTAATCTCCATGATCGATCCTCCCCGAGCTGCAGTGCCAGATGCTGTGGGCAAATGCCGTTCTGCGGGTATTAAgGTCATAATGGTGACGGGTGACCATCCTATAACTGCCAAGGCCATTGCTAAAGGTGTTGGCATTATCTCTGAGGGCAATGAAACGGTGGAGGATATCGCTGAAAGACTTAATATACCACTGAGCCAAGTCAATCCacgaGAGGCTAAAGCCTGTGTGGTCCACGGTTCAGACCTGAAGGACATGAGCGCCGAGTATCTGGATGATATTCTGAGGAACCACACGGAGATTGTGTTTGCTCGCACTTCACCTCAGCAAAAGCTCATCATCGTGGAGGGCTGCCAGAGACAGGGTGCCATAGTGGCAGTGACAGGTGACGGGGTGAACGACTCTCCAGCTCTGAAGAAGGCTGACATCGGCGTTGCCATGGGAATCACAGGCTCAGACGTCTCCAAGCAAGCAGCTGACATGATCCTGCTGGACGACAACTTTGCTTCAATCGTTACAGGAGTGGAAGAGGGTCGTCTGATCTTCGACAACCTGAAGAAGTCGATTGCGTACACGCTGACCAGTAATATCCCAGAGATCACACCCTTTCTGCTCTTCATCATCGCCAGTGTTCCTCTGCCTCTGGGCACCGTCACCATCCTCTGCATCGACCTTGGCACTGACATGgtTCCTGCAATCTCTCTGGCGTACGAGTCGGCAGAGAGTGACATTATGAAGCGTCAGCCCCGAAACCCCAAAACTGACAAGCTGGTGAATGAAAGGCTCATCAGCATGGCTTACGGACAGATCGgtATGATCCAGGCTCTGGGAGGTTTCTTCACCTATTTTGTGATAATGGCTGAAAATGGATTTCTGCCTCAAACGCTGCTGGGAATTCGACTGGATTGGGATGATCGTACAGTTAATGACCTGGAGGACGGCTATGGCCAGCAATGGaCGTACGAGCAGCGTAAGATCATCGAGTTCACCTGTCACACGTCGTTCTTCGTCAGCAttgtggtggtgcagtgggccGATCTCATCATCTGCAAGACACGCAGGAACTCCGTCTTCCAGCAGGGCATGAAGAATAGGATTCTCATTTTCGGCCTGTTTGCCGAGACGGCTCTAGCAGCCTTCCTGTCCTACTGCCCCGGTATGGACGTTGCCCTGAGGATGTACCCACTCAAGATTATGTGGTGGTTCTGTGCTTTCCCGTACAGTCTGCTTATCTTTGTGTATGATGAGATCCGTAAGTTTATCCTGCGGAGAAATCCAGGAGGCTGGGTGGAAATAGAGACCTACTATTAACAACAATATGCAATCTCTGTGCATGACTGccagtgtacgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtACAAATGAAGGATCAGACAATCGTGTCATTTATCATGTAAGACTGAATGTATGCGactgtgtgtgcgagtgtgtaaaTCCACCGTGCATAATCTGTTTACATGATGTATCCTGAATATCGTTATGCTCAATAATGTGATGATTTAATAGCCGAATAGTGTTCAGGATCATTACATTTCTACTGATTTGATTTTTGCTGTGAGTTTATTACTTTTCGCCTGGTTGTAAGCTTTCATTTAGAGTTCATTTTCTTTACGTTGGCACTTGTGTGTGAAATGTAGTACACTGCTCATATATTTCTTTTCAATTCGTCTTTATGTActtcttgttttttgtttgtttttttggtggtGCTAGTTCATTAAACTTTTAATGTAATATTGCTATCATAATTATTTgggttttgtttaaatacatctaaaaacaaaacaaaataataaaatgcaataaaaagtgtgtgaatatagcccaTTAGTTTGACTTTTATGTTGGACTTGGCATTTTCTATATAATTCACTGTGCAACATCAACTGtaaagataaaaatgaaataaaaattgtaatggCA

Function

symbol description
atp1a2a Predicted to enable P-type sodium:potassium-exchanging transporter activity. Acts upstream of or within several processes, including animal organ development; heart contraction; and thigmotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including Kupffer's vesicle; brain; heart; musculature system; and pronephric duct. Human ortholog(s) of this gene implicated in alternating hemiplegia of childhood; benign neonatal seizures; familial hemiplegic migraine 2; hypertension; and migraine with aura. Orthologous to human ATP1A2 (ATPase Na+/K+ transporting subunit alpha 2).

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0010084 specification of animal organ axis polarity biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0007507 heart development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0051480 regulation of cytosolic calcium ion concentration biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0001947 heart looping biological_process
GO:0042044 fluid transport biological_process
GO:0060047 heart contraction biological_process
GO:0001966 thigmotaxis biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005391 sodium molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-001212-6 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Acts upstream of or within several processes, including animal organ development; heart contraction; and thigmotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including Kupffer's vesicle; brain; heart; musculature system; and pronephric duct. Human ortholog(s) of this gene implicated in alternating hemiplegia of childhood; benign neonatal seizures; familial hemiplegic migraine 2; hypertension; and migraine with aura. Orthologous to human ATP1A2 (ATPase Na+/K+ transporting subunit alpha 2).

Ensembl:

ensembl_id ENSDARG00000010472

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032896 False 3907 mRNA 0.48 24 44203075 44255537
TCONS_00032897 True 3869 mRNA 0.48 25 44203078 44255537

Neighbor

gene id symbol gene type direction distance location
XLOC_016779 sdhc coding downstream 3235 44192652 ~ 44199840 (-)
XLOC_016778 cadm3 coding downstream 19462 44049081 ~ 44183613 (-)
XLOC_016777 kirrel1b coding downstream 164299 43961626 ~ 44038776 (-)
XLOC_016776 si:ch211-195h23.4 coding downstream 260480 43940925 ~ 43942595 (-)
XLOC_016775 zeb1a coding downstream 350868 43807230 ~ 43852207 (-)
XLOC_016781 mpz coding upstream 3945 44259482 ~ 44283554 (-)
XLOC_016782 lig1 coding upstream 45739 44301276 ~ 44344321 (-)
XLOC_016783 si:ch211-265g22.4 coding upstream 111435 44366972 ~ 44368824 (-)
XLOC_016784 pip4p1a coding upstream 127638 44383175 ~ 44398611 (-)
XLOC_016785 pih1d3 coding upstream 145233 44400770 ~ 44406125 (-)
XLOC_016770 NA non-coding downstream 572992 43629753 ~ 43630083 (-)
XLOC_016766 NA non-coding downstream 631315 43567145 ~ 43571760 (-)
XLOC_016764 CABZ01058723.1 non-coding downstream 686057 43509502 ~ 43517018 (-)
XLOC_016763 NA non-coding downstream 823982 43378102 ~ 43379093 (-)
XLOC_016755 NA non-coding downstream 1216105 42981204 ~ 42986970 (-)
XLOC_016786 BX323035.1 non-coding upstream 267319 44522856 ~ 44524381 (-)
XLOC_016787 NA non-coding upstream 306477 44562014 ~ 44563193 (-)
XLOC_016791 CR788281.2 non-coding upstream 507545 44763082 ~ 44763375 (-)
XLOC_016792 CR788281.1 non-coding upstream 518738 44774275 ~ 44774595 (-)
XLOC_016796 NA non-coding upstream 788945 45044482 ~ 45045520 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000152_01380778_01397434 ATP1A2A coding CI01000152 null 1380140 ~ 1397434 (-)