Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00032896 |
| length | 3907 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 24 |
| gene id | XLOC_016780 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 44203075 ~ 44255537 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006883 | cellular sodium ion homeostasis | biological_process |
| GO:0010084 | specification of animal organ axis polarity | biological_process |
| GO:1902600 | proton transmembrane transport | biological_process |
| GO:0007507 | heart development | biological_process |
| GO:0007519 | skeletal muscle tissue development | biological_process |
| GO:0051480 | regulation of cytosolic calcium ion concentration | biological_process |
| GO:0036376 | sodium ion export across plasma membrane | biological_process |
| GO:0007368 | determination of left/right symmetry | biological_process |
| GO:0030007 | cellular potassium ion homeostasis | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0006813 | potassium ion transport | biological_process |
| GO:1990573 | potassium ion import across plasma membrane | biological_process |
| GO:0001947 | heart looping | biological_process |
| GO:0042044 | fluid transport | biological_process |
| GO:0060047 | heart contraction | biological_process |
| GO:0001966 | thigmotaxis | biological_process |
| GO:0061371 | determination of heart left/right asymmetry | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005391 | sodium | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0008556 | potassium transmembrane transporter activity, phosphorylative mechanism | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-001212-6 | Predicted to enable P-type sodium:potassium-exchanging transporter activity. Acts upstream of or within several processes, including animal organ development; heart contraction; and thigmotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including Kupffer's vesicle; brain; heart; musculature system; and pronephric duct. Human ortholog(s) of this gene implicated in alternating hemiplegia of childhood; benign neonatal seizures; familial hemiplegic migraine 2; hypertension; and migraine with aura. Orthologous to human ATP1A2 (ATPase Na+/K+ transporting subunit alpha 2). |
| ensembl_id | ENSDART00000011188 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00032886 | lncRNA | downstream | 367573 | 43825615 ~ 43835502 (-) | False | XLOC_016775 |
| TCONS_00033928 | lncRNA | downstream | 495122 | 43707467 ~ 43707953 (-) | False | XLOC_016773 |
| TCONS_00033401 | lncRNA | downstream | 572992 | 43629753 ~ 43630083 (-) | True | XLOC_016770 |
| TCONS_00033927 | lncRNA | downstream | 631315 | 43569686 ~ 43571760 (-) | True | XLOC_016766 |
| TCONS_00033926 | lncRNA | downstream | 631405 | 43568074 ~ 43571670 (-) | False | XLOC_016766 |
| TCONS_00032904 | lncRNA | upstream | 20997 | 44276534 ~ 44282837 (-) | True | XLOC_016781 |
| TCONS_00032909 | lncRNA | upstream | 145543 | 44401080 ~ 44406125 (-) | False | XLOC_016785 |
| TCONS_00032910 | lncRNA | upstream | 148218 | 44403755 ~ 44406122 (-) | True | XLOC_016785 |
| TCONS_00033929 | lncRNA | upstream | 306477 | 44562014 ~ 44563193 (-) | True | XLOC_016787 |
| TCONS_00033930 | lncRNA | upstream | 788945 | 45044482 ~ 45045520 (-) | True | XLOC_016796 |
| TCONS_00032893 | mRNA | downstream | 3235 | 44192652 ~ 44199840 (-) | False | XLOC_016779 |
| TCONS_00032895 | mRNA | downstream | 3353 | 44192799 ~ 44199722 (-) | True | XLOC_016779 |
| TCONS_00032891 | mRNA | downstream | 19462 | 44049081 ~ 44183613 (-) | False | XLOC_016778 |
| TCONS_00032892 | mRNA | downstream | 19624 | 44049147 ~ 44183451 (-) | True | XLOC_016778 |
| TCONS_00032889 | mRNA | downstream | 164299 | 43961626 ~ 44038776 (-) | False | XLOC_016777 |
| TCONS_00032898 | mRNA | upstream | 3945 | 44259482 ~ 44282909 (-) | False | XLOC_016781 |
| TCONS_00032899 | mRNA | upstream | 4987 | 44260524 ~ 44280061 (-) | False | XLOC_016781 |
| TCONS_00032900 | mRNA | upstream | 7375 | 44262912 ~ 44282909 (-) | False | XLOC_016781 |
| TCONS_00032901 | mRNA | upstream | 7968 | 44263505 ~ 44283554 (-) | False | XLOC_016781 |
| TCONS_00032902 | mRNA | upstream | 8296 | 44263833 ~ 44282796 (-) | False | XLOC_016781 |
| TCONS_00032894 | other | downstream | 3378 | 44192799 ~ 44199697 (-) | False | XLOC_016779 |
| TCONS_00032856 | other | downstream | 1240731 | 42962228 ~ 42962344 (-) | True | XLOC_016753 |
| TCONS_00032848 | other | downstream | 1498142 | 42672850 ~ 42704933 (-) | True | XLOC_016744 |
| TCONS_00032837 | other | downstream | 1787287 | 42404061 ~ 42415788 (-) | True | XLOC_016740 |
| TCONS_00032833 | other | downstream | 1827966 | 42372009 ~ 42375109 (-) | True | XLOC_016738 |
| TCONS_00032911 | other | upstream | 267319 | 44522856 ~ 44524381 (-) | True | XLOC_016786 |
| TCONS_00032916 | other | upstream | 502512 | 44758049 ~ 44760347 (-) | True | XLOC_016790 |
| TCONS_00032917 | other | upstream | 507545 | 44763082 ~ 44763375 (-) | True | XLOC_016791 |
| TCONS_00032918 | other | upstream | 518738 | 44774275 ~ 44774595 (-) | True | XLOC_016792 |
| TCONS_00032922 | other | upstream | 818257 | 45073794 ~ 45073910 (-) | True | XLOC_016798 |
