RNA id: TCONS_00032894


Basic Information

Item Value
RNA id TCONS_00032894
length 653
RNA type processed_transcript
GC content 0.44
exon number 6
gene id XLOC_016779
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 44192652 ~ 44199840 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaaatgtgttttgcttTCTATTTGGTTTAAGGACGGTGGCCCGACAGGGTCTGTATTCATCACGGTCACAGTTTGGCGTTCTCTACAGACATGCTGTTCCAATGGGGACTACATCTAATGAGGAAATGGACAAGTTTTGGGCAAAAAACACACGACTCAATCgaccaatgtcaccacatatgaCCATCTACAAGTGGTCTGTCCCCATGGCGATGTCAATCTCACACAGAGGAACAGGCATAGCACTAAGTTCAGGAATATCTGCATTTGCACTTGCTGCGTTGGTGTTACCGGAGAGTTACCCGTATTACCTTGATCTGATTCACTCCTTGACCTTCGGGCCCCAGTTTCTTGCTTTCAGCAAATTTGCTCTCGCTTTCCCAGTGGTTTACCACACTTATAATGGCATCCGTCATCtggcATGGGATGCTGGGAAGGGTTTTAAGATTCCTGAGGTCTATCGTTCTGGCTACGTTGTCCTTGGTCTGACTGTTCTCACGTCCATTGGTCTTGCTGCCATGTAGATGCACAAAAGTCTAACAAATGAAGACATGGAAATAGAGAAAGCTGGGTTCTTTGATTTATCTGTCCTTGAAGCGGTCTGTAAGGACCAAattcattaatataataaaatacacatcTATATAAAACC

Function

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006121 mitochondrial electron transport, succinate to ubiquinone biological_process
GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) cellular_component
GO:0045281 succinate dehydrogenase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0000104 succinate dehydrogenase activity molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00650 Butanoate metabolism
ko00190 Oxidative phosphorylation
ko00720 Carbon fixation pathways in prokaryotes
ko04714 Thermogenesis
ko05208 Chemical carcinogenesis - reactive oxygen species
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko05415 Diabetic cardiomyopathy
ko04932 Non-alcoholic fatty liver disease

ZFIN:

id description
ZDB-GENE-040801-26 Predicted to enable electron transfer activity; metal ion binding activity; and succinate dehydrogenase activity. Predicted to be involved in mitochondrial electron transport, succinate to ubiquinone. Predicted to act upstream of or within tricarboxylic acid cycle. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone). Human ortholog(s) of this gene implicated in Carney-Stratakis syndrome; gastrointestinal stromal tumor; and paraganglioma. Orthologous to human SDHC (succinate dehydrogenase complex subunit C).

Ensembl:

ensembl_id ENSDART00000140718

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032886 lncRNA downstream 357297 43825615 ~ 43835502 (-) False XLOC_016775
TCONS_00033928 lncRNA downstream 484846 43707467 ~ 43707953 (-) False XLOC_016773
TCONS_00033401 lncRNA downstream 562716 43629753 ~ 43630083 (-) True XLOC_016770
TCONS_00033927 lncRNA downstream 621039 43569686 ~ 43571760 (-) True XLOC_016766
TCONS_00033926 lncRNA downstream 621129 43568074 ~ 43571670 (-) False XLOC_016766
TCONS_00032904 lncRNA upstream 76837 44276534 ~ 44282837 (-) True XLOC_016781
TCONS_00032909 lncRNA upstream 201383 44401080 ~ 44406125 (-) False XLOC_016785
TCONS_00032910 lncRNA upstream 204058 44403755 ~ 44406122 (-) True XLOC_016785
TCONS_00033929 lncRNA upstream 362317 44562014 ~ 44563193 (-) True XLOC_016787
TCONS_00033930 lncRNA upstream 844785 45044482 ~ 45045520 (-) True XLOC_016796
TCONS_00032891 mRNA downstream 9186 44049081 ~ 44183613 (-) False XLOC_016778
TCONS_00032892 mRNA downstream 9348 44049147 ~ 44183451 (-) True XLOC_016778
TCONS_00032889 mRNA downstream 154023 43961626 ~ 44038776 (-) False XLOC_016777
TCONS_00032890 mRNA downstream 154101 43962978 ~ 44038698 (-) True XLOC_016777
TCONS_00032888 mRNA downstream 250204 43940925 ~ 43942595 (-) True XLOC_016776
TCONS_00032896 mRNA upstream 3378 44203075 ~ 44255537 (-) False XLOC_016780
TCONS_00032897 mRNA upstream 3381 44203078 ~ 44255537 (-) True XLOC_016780
TCONS_00032898 mRNA upstream 59785 44259482 ~ 44282909 (-) False XLOC_016781
TCONS_00032899 mRNA upstream 60827 44260524 ~ 44280061 (-) False XLOC_016781
TCONS_00032900 mRNA upstream 63215 44262912 ~ 44282909 (-) False XLOC_016781
TCONS_00032856 other downstream 1230455 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032848 other downstream 1487866 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032837 other downstream 1777011 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 1817690 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032811 other downstream 2245903 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032911 other upstream 323159 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 558352 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032917 other upstream 563385 44763082 ~ 44763375 (-) True XLOC_016791
TCONS_00032918 other upstream 574578 44774275 ~ 44774595 (-) True XLOC_016792
TCONS_00032922 other upstream 874097 45073794 ~ 45073910 (-) True XLOC_016798

Expression Profile

//