RNA id: TCONS_00032898


Basic Information

Item Value
RNA id TCONS_00032898
length 2344
RNA type mRNA
GC content 0.44
exon number 6
gene id XLOC_016781
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 44259482 ~ 44283554 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGCCCTCTGGTCTCATTCTCTTTTCTCCCTCCATCTCTTCTCCTTTCTCCATCCCTTGCTCTCTCGGGACCCCTCACGTATACTGACCTGCGGGGAGATCGGAGAGAGATCATGCTGTCCGTACTGGCACTGACCTCCGTGGTGCTCTTGGGCATAGCCTCTCAGAGCACGGCTCTAGTGGTGAACACAGACTCGGAGAAACATGCATTGGTGGGCTCAGATGTCAGACTCTCCTGCTCTTTCTTCTCCTGGCAGTGGACTTCTCCAGAAGTGTCCTTTACATGGCATTACCGTCCAGATGGGGCTAAGGACGCAATCTCAATTTTCCACTATGGAGGTGGAGAAGCTTATCCAGCTAATAAAGGCCCATTCCAAAACCGCCTGGAGTTTGTGGGCAACCCTAGTCGCCGTGACGGTTCTATCCTGATCAAGAACCTTGATTTCGGAGACAATGGAACCTTCACCTGTGATGCCAAGAACCCACCTGACATCGGCGGCCACCCCTCAACCATTCGGCTGCTGGTGTTTGAGAAGGTTCCAGTGCAGGCTGGTGTGATAACGGGCTCCATTATTGGTGTAGTGTTGGGACTGCTGATCCTCGTTGTGGCAATTTACTATCTGATGCGCTTCCTGGTGGCCAGAAGGGTGTTCAGCTTGAGCATGAGCAAACATGGCAAGAAAGGCAAAGGAAAAGAAGGATCACAGCAAAAACAGCGTATCTGACACCCTTTTTCTGGTCATTTTTCTACTTTCACATGTATAAATTCATCTCATCATCTGATACACTGGTGCTATTACTTCCTGTAGGCCGGCCCCCAAAAGTAGCCTCCCATCCCCACCCTTCATTTACTGAGAGCTAAATATATAGCACTAGTATTTTTAGTCACACACACTTTTTAGtctcactttttaaaattccATTACAGTCAAAGAGAATTCCTTCTttcggaaacacacacactcactaacactCATCTCATGTATCCCATCACGCAGTTTTAAGTGCCTTCCCAAAGTACATTTACAGCGAATCTGGCTTAGTTTTTGCTCTGACAGCGTCGACTGAAATACCCGAAATGACGTTGATACTGTTGGCAGCGAAACTCAAACATGCTGTGAGAGTTACTTGACACTCTAAGCCAGATTCTCACGTCTGTTGTCTGACAAGCAGCTGATTATTTTAAAGCACACTTGTAATGGCAGAACGACCTCTGTCTCCATTCTGCCCCTTATTTTTTTAAGCCAATGAGGGCCGGCTCCTATGGAGGCACTGTCCCTCGACCTTCATATATCATTAGTAAAGCTCCATCGCTCCATCCCGAATCATAGTTTTACTTCACCTCTCTCTAATTCTCCTCTAACTATCATAAACGCTCATCCACCAGCTCCTCTTCTCATTCCCTGTTTCTGCTGGTATGGTGCTCTCTCCTGCCCCCCTGCTGCCCACAGGAGAAACATTTACATTCGGCCAGTCACAAAGACgtcaatgcaaaaacaaaaagttaattTAACTAGCTCTCTGCAGACTATGAGGCGCATGTGTATGTTTTTATTCTGATGAGATGTAACCTGTCAACATTAGGGGAACAAAACAACATAAAGACGCCATGTCATTGTAAGTAATGAAAATCCTATGACTGTTTGTGTGTCGGAAGCAGAAATGTAATAGAGttttaatgatgtttaataatgtttctgCACTTTCATTTGACTGACGTGGCGGTGTTCATGTGGCTGCTGCTTCACAACAGTGTTTACCATCAGCTTGTTGGCTTGCTAAGTCCACAGGAAGTGATGCAACGAGGGCAGAGAGGTTTTCGAGAGAGATATAAATGATGAAATACCGGGTCGGAGACTTGGACTGAATACATATTGAGGGGAAAAGTCAGGCCAAAGTCCAGTAAACATTCTCACTGGATGTGTTTTTGTGTCTTCAAGTCTTCGTGTCAACCCTGAGACCGAGAGGGGCTCTCATCGGGAAAGTTTTAGAATAGTGAGGGCTTGTGGGAAATATGTTTGTTACACTAGAGACAGATGCTTTTTATGCATCTCAGAGTTGAGGTCGAGCAGCCACATGGCTTCTGccattaaactgtgtttaaataTTGGGGAATCGCCATGTTGTATGTATTGTGTGCCCCTGTATTGGTAAAGGTCTAGGTAACCGTTCTCTCTTTAAACTCCATTTAAAAcggctaataattttttacttttattttgactttaacCTCGCTAACATTGGTTTTCTGTAAAATgtcttgtaaaatgtaaatgctcAAGTTcaaataatttcagaaaaatgtcaataaaaaaatcaGATCCCTCGTGTGTTTCCAATGTTA

Function

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0043209 myelin sheath cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04514 Cell adhesion molecules
ko04515 Cell adhesion molecules

ZFIN:

id description
ZDB-GENE-010724-4 Predicted to be involved in myelination. Located in myelin sheath. Is expressed in several structures, including Rohon-Beard neurons; basal plate midbrain region; central nervous system; cranial nerve; and oligodendrocyte. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease (multiple). Orthologous to human MPZ (myelin protein zero).

Ensembl:

ensembl_id ENSDART00000109251

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032886 lncRNA downstream 423980 43825615 ~ 43835502 (-) False XLOC_016775
TCONS_00033928 lncRNA downstream 551529 43707467 ~ 43707953 (-) False XLOC_016773
TCONS_00033401 lncRNA downstream 629399 43629753 ~ 43630083 (-) True XLOC_016770
TCONS_00033927 lncRNA downstream 687722 43569686 ~ 43571760 (-) True XLOC_016766
TCONS_00033926 lncRNA downstream 687812 43568074 ~ 43571670 (-) False XLOC_016766
TCONS_00032909 lncRNA upstream 118171 44401080 ~ 44406125 (-) False XLOC_016785
TCONS_00032910 lncRNA upstream 120846 44403755 ~ 44406122 (-) True XLOC_016785
TCONS_00033929 lncRNA upstream 279105 44562014 ~ 44563193 (-) True XLOC_016787
TCONS_00033930 lncRNA upstream 761573 45044482 ~ 45045520 (-) True XLOC_016796
TCONS_00033931 lncRNA upstream 769628 45052537 ~ 45067186 (-) True XLOC_016797
TCONS_00032896 mRNA downstream 3945 44203075 ~ 44255537 (-) False XLOC_016780
TCONS_00032897 mRNA downstream 3945 44203078 ~ 44255537 (-) True XLOC_016780
TCONS_00032893 mRNA downstream 59642 44192652 ~ 44199840 (-) False XLOC_016779
TCONS_00032895 mRNA downstream 59760 44192799 ~ 44199722 (-) True XLOC_016779
TCONS_00032891 mRNA downstream 75869 44049081 ~ 44183613 (-) False XLOC_016778
TCONS_00032905 mRNA upstream 18367 44301276 ~ 44344321 (-) True XLOC_016782
TCONS_00032906 mRNA upstream 84063 44366972 ~ 44368824 (-) True XLOC_016783
TCONS_00032907 mRNA upstream 100266 44383175 ~ 44398611 (-) True XLOC_016784
TCONS_00032908 mRNA upstream 117861 44400770 ~ 44406125 (-) False XLOC_016785
TCONS_00032912 mRNA upstream 414659 44697568 ~ 44720551 (-) True XLOC_016788
TCONS_00032894 other downstream 59785 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032856 other downstream 1297138 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032848 other downstream 1554549 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032837 other downstream 1843694 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 1884373 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032911 other upstream 239947 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 475140 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032917 other upstream 480173 44763082 ~ 44763375 (-) True XLOC_016791
TCONS_00032918 other upstream 491366 44774275 ~ 44774595 (-) True XLOC_016792
TCONS_00032922 other upstream 790885 45073794 ~ 45073910 (-) True XLOC_016798

Expression Profile

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