RNA id: TCONS_00032907


Basic Information

Item Value
RNA id TCONS_00032907
length 3929
RNA type mRNA
GC content 0.36
exon number 7
gene id XLOC_016784
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 44383175 ~ 44398611 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tctccggTAGCACAACAATACAAGCTCTCGCCGCTCCCCCCTCTTTACGCCTCGCTCTCGTTATGGCGGACGGCGAGCGGTCCCCGTTGCTCTCGGATCTTGGTGATGGAGCTCTGGGCAGCGGTAACGGAGGGGTGTCTCCCGGAGCGGCTTCCCTCGGCGCTCCGAACAAACCGCAGAgTTTTCCTCCGTTTCCGAGCTCAACTCAGCCGCCTGTGTTGTTGAGTGAGAATCCTCCACCATATTCCCCCCTGACGTCTCCTGAGAGTGGCAGTGCCCCGGTCATCAGCTGTAGGGTGTGCCAGTCACTCATTAGTGTTGAGGGCAAAATCCATCAACATGTGGTCAAGTGCGGCGTCTGCAATGAAGCCACACCCATAAAGAATGCTCCTGCAGGCAAGAAATATGTGCGCTGCCCTTGTAACTGTCTTCTCATCTGCAAGGTCACATCTCAAAGGATCGCCTGCCCTCGGCCTTATTGTAAGAGGATCATAAATTTGGGGCCAGTCCATCCAGGTCCAGCCAGCCCAGATCCACAACCTGCCGGAGCCAGAGTTTCCTGCGGACACTGCAGCAACACTTTCCtgTGGACCGAGTTTACTGACAGAACACTGGCTCGATGCCCCCATTGCAGAAAAGTATCTTCAATTGGCCAGAGATATCCAAGGAGGCGGAGTCTGTGGTGCTATCTGCTGTGTTTGCTATTTAGCATCTCGGCTGCTGGTCTGATTgcagGAACGTGGTCTCAGGCGCAGGTGTACGGGGGTATTTATGCCTCGTGGGCTGCGGCGTTGTTGCTGGTGGTGTTGACTCTGGCCAGGGCACTTTACTGGAGCTGCATGAGGGTCAGCCAGCCTCTCCACAACCTCACatagagacagaaaaaaaaacacagagggGTCATGGGGGAAATAAAAGTCCACAGCAAAACAGCTAGAGAGAATCATGGTCAACAATTAAAGCTTGATTGTGAAGGCTGGAATCAAGGGTCAAAGTAAAATCCACGCTtgagaagcaaaacaaaaaaaaagctattatGGCAAAGAAGATTAgtgttttaaagttatttttattcgGAAGCTTTCTCTGGATGTCTTTTCATCTGTGAATATAAATGACTTGTTACTCATGCAGTTCTGATTCCAAATGCCCCCGCTGGGTTTTAACTCATTACAAAACATGTAATCAAACTCTGTACAACTTGAATTAACTACACTACAATACGCAAATGACATAGCACATTCAAAGCTTGAGCGATGTTTGCTGCCTCTCTagtgtccaaaaaaaaaagccttataAAGAGAGAGGAAGTACAGGTTGATCTCCACTAGAGGGTGTtgaaaaaccacacacacacttatacacacagcCTATTTCTCTGTACAAACACTGCTAATCGGAATCATTTGGACAGAGCCTGATTAACAAATGCGCAGAACATTTCTTTAATTGATTTTCTTCCCCCACATGTGAAAGTGTGCTCAAACACCCTTTCCTGTTTCTTCATCCTTAGTTATGAATGTTAAgaacagtatttttttattattataattgtggattttgtttgtaaatatttattgtttgtttcacGAATGACTGAACAGTTGCACTGTAGCACTAACACGCTGTGATtccttttcatgtttttatttgatttgctaAATCACTACTGAGAAGTATACGGAAGCCTGTTTCTGCCAcaggattaaaaaataaattgaaaagaaAAGGTTTTTGTTTTCCCCTAAAAGTTAGAATTAAGAAAAAATAACTTGGAATTTCAAGTGGAAAATGTAGCAGTTTGCAATGTAGTTTAAACTCtgtattttaagaaaataataaaacaacatgtCAGAATTTCttgatttaaattcaaaattttgGGAAAAAGTCAGAATGGGTAGATTTAAAGTCAGatttctgatttaaaaatgtcAGAATTTCTAGATTTTAATTTAGAATTAAAACGCCAGAATTTCATGATTTAAATTCTGAGTAAAACATGTCAGAATTTCTAGATTTCAACTCGGAATAAAACATGTCAGAATTTCTATATTTAAATTCAAAGTAAAACATGTCAGAATTTCTAGATTTCAACTCGAAATAAAACATGTCAGAATTTCCAGATTTAAATTCAGAGTAAAACATGTCAGAATTTCTAGATTTCAACTCGGAATAAAACATGTCAGAATTTCCAGATTTAAATTCAGAGTAAAACATGTCAGAATTTCTAGATTTAAATTCAGAGTAAAACATGTCAGAATTTCTAGATTTCAACTCGGAATAAAACATGTCAGAATTTCTATATTTAAATTCAAAGTAAAACATGTCAGAATTTCTAGATTTCAACTCGGAATAAAACATGTCAGAATTTCCAGATTTAAATTCAGAGTAAAACATGTCAGAATTTCTAGATTTCAACTCGAAATAAAACATGTCAGAATTTCCAGATTTAAATTCAGAGTAAAACATGTCAGAATTTCTAGATTTCAACTCGGAATAAAACATGTCAGAATTTCCAGATTTAAATTCAGAGTAAAACATGTCAGAATTTCTAGATTTAAATTCAGAGTAAAACATGTCAGAATTTCTAGATTTCAACTCGGAATAAAACATGTCAGAATTTCTATATTTAAATTCAAAGTAAAACATGTCAGAATTTCTAGATTTCAACTCGGAATAAAACATGTCAGAATTTCCAGATTTAAATTCAGAGTAAAACATGTCAGAATTTCTAGATTTCAACTCGGAATAAAACATGTCAGAATTTCCAGATTTAAATTCAGAGTAAAACATGTCAGAATTTCTAGATTTCAACTCGGAATAAAAACATGTCAGAATTTCTAGATTTAAATTCAAAGTAAAACATTTCAgaatttttagatttaaattcAGATTACAAAATGTCTGAATTTCTTGATTAAAATTCTGATTAAAACTGTCAGATTTCTAGAATTTAATTCAGAATTCAGATTTTAAACATTTCTGAATTTCtagattttaatttaagaattcAGATAAAAAAATTGCCAGAATTGCTAGATTTGAATTCAGAATTAAGAtttaaaaatgtcagtttttagatttaatttcagAATAAAACGTCAGAATTTCTAGATTTAAATTCAGGttgaaaaatgtcagaattttggagtgaaatataaactcagaattctaACTTTTACTTGCAATttaatgaaaaaacaacaacttttaataagtaaataaattaatgtgtttattctgTGGCAGAAACAAGCTTTCCCAGCAAAATCACTACTGATAATGTTTTGACTGGAAGTAATTTTGAGATAACAGCTACAAATGCCTTTGGGAAAGCAGATAAAGAAGTCATATCTTTATTTTCCAATGAAGGTTCAGCTGTGTTTCATGGACTTTATCAAAAGGGTCATTAACCTCTCTTCTCATGCTCATGTGAAGTTAATCGTCATTTTCAGGTACTGTACGTTTGATTATGTTTGAACTCTGATATGATACTAATGAGATTAATCAACCACTAGATTTAGATTCTAAACTTCCAGACCTTTGTTTCTCTTCTTCAGATTGCAGATTTTCAACCAATATACTCATCAATATGCTATGGAAACATGTTTCAAGAAAAGAAAAGATTcagttataataacaataataatgcattaaagTTTTAAACTCAGAATTGCTAAAGTCTGAATTGCTAAAATCAGACTTATGAGATATAAACTGAACatgaatacattaaaaatatataattataactgCAAATCTGGACTCAAAGTCAGAAACTTCATGTCTGGACGTCTAGAATCAGGAGGTCGGGATGTTATTTATAAAGAGCAGAAGGCCAATGATGGAGGTCTCCTCTGAATTTGTTTACATGAGATTAAGATTACACATGATTAAAATGGTGATGAAGTTATAAAACAGTGAAA

Function

GO:

id name namespace
GO:0046856 phosphatidylinositol dephosphorylation biological_process
GO:0005764 lysosome cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0005768 endosome cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0034597 phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051113-312 Predicted to enable phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity. Predicted to be involved in phosphatidylinositol dephosphorylation. Predicted to be located in endosome; lysosome; and membrane. Predicted to be integral component of membrane. Predicted to be active in bounding membrane of organelle and plasma membrane. Is expressed in female organism. Orthologous to human PIP4P1 (phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1).

Ensembl:

ensembl_id ENSDART00000146192

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032904 lncRNA downstream 100338 44276534 ~ 44282837 (-) True XLOC_016781
TCONS_00032886 lncRNA downstream 547673 43825615 ~ 43835502 (-) False XLOC_016775
TCONS_00033928 lncRNA downstream 675222 43707467 ~ 43707953 (-) False XLOC_016773
TCONS_00033401 lncRNA downstream 753092 43629753 ~ 43630083 (-) True XLOC_016770
TCONS_00033927 lncRNA downstream 811415 43569686 ~ 43571760 (-) True XLOC_016766
TCONS_00032909 lncRNA upstream 2469 44401080 ~ 44406125 (-) False XLOC_016785
TCONS_00032910 lncRNA upstream 5144 44403755 ~ 44406122 (-) True XLOC_016785
TCONS_00033929 lncRNA upstream 163403 44562014 ~ 44563193 (-) True XLOC_016787
TCONS_00033930 lncRNA upstream 645871 45044482 ~ 45045520 (-) True XLOC_016796
TCONS_00033931 lncRNA upstream 653926 45052537 ~ 45067186 (-) True XLOC_016797
TCONS_00032906 mRNA downstream 14351 44366972 ~ 44368824 (-) True XLOC_016783
TCONS_00032905 mRNA downstream 38854 44301276 ~ 44344321 (-) True XLOC_016782
TCONS_00032901 mRNA downstream 99621 44263505 ~ 44283554 (-) False XLOC_016781
TCONS_00032900 mRNA downstream 100266 44262912 ~ 44282909 (-) False XLOC_016781
TCONS_00032908 mRNA upstream 2159 44400770 ~ 44406125 (-) False XLOC_016785
TCONS_00032912 mRNA upstream 298957 44697568 ~ 44720551 (-) True XLOC_016788
TCONS_00032913 mRNA upstream 326939 44725550 ~ 44746723 (-) True XLOC_016789
TCONS_00032914 mRNA upstream 350590 44749201 ~ 44777679 (-) False XLOC_016790
TCONS_00032915 mRNA upstream 351292 44749903 ~ 44777592 (-) False XLOC_016790
TCONS_00032894 other downstream 183478 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032856 other downstream 1420831 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032848 other downstream 1678242 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032837 other downstream 1967387 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 2008066 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032911 other upstream 124245 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 359438 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032917 other upstream 364471 44763082 ~ 44763375 (-) True XLOC_016791
TCONS_00032918 other upstream 375664 44774275 ~ 44774595 (-) True XLOC_016792
TCONS_00032922 other upstream 675183 45073794 ~ 45073910 (-) True XLOC_016798

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000152_01557532_01565618.mRNA True 1174 mRNA 0.46 7 CI01000152 1557225 ~ 1565618 (-)