RNA id: TCONS_00032910


Basic Information

Item Value
RNA id TCONS_00032910
length 744
lncRNA type retained_intron
GC content 0.41
exon number 4
gene id XLOC_016785
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 44400770 ~ 44406125 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACGCTAAACTTAGCACCCGGAAGAGCAGGGCATTCACTTCATGCTAACGCTTTACAATAAAAAGAAAGAACattaaaaactctaaaaacaCTTACTTTTTCGTCGAAACCTCTCGAATAACACAGATGGAGGGTCTCGCGTCCGTTCATGATCTTCAGGCGTTGTCTGCTCTGCTCTCCAAGCCAAAGGATAATGATGAGGAAGAAGAGGACCTAACGCTACAGcCCATGGCGAGGATGGGGCCGGGGCATATCGGCCCTCCTGCTGCACCTTCAGGAAAAAACAAGGGTAGCACTAGTGCCTATGTGAAGAAGAACAGCAAAGACATCTGGGATGAGGCTGAGGTGACCGAAGGGGCACATTTTGATGACCTCAATGATCCACGACCACAACCAGAGTACGAGATTGTGCTGAAACAGTCTGTCGGGACTGAAGATTTGTTTCTTGGCTTAAGCAGAAAAGACCCCTCATCCATGTGTTGTGAAAGCATGCTGGTACCGCTCATTCCTCACTTATAATCTTAAACATTAATACAACATTAATCTTATAGCTCAGAACACTGTGGATTTACTGACTGATTTAAAGTTTTAGATCTAAAGCTTCAGATTTAAGCTTAAAAAGTTTGGGTGTAgaaatgttattttcttttccgAAAGAGATttcccacatgaaaaaaatactacagtattttatagaaaataatactctagtgttttttaaactaaactacaataaAGTGTTT

Function

GO: NA

KEGG:

id description
ko04812 Cytoskeleton proteins

Ensembl:

ensembl_id ENSDART00000136858

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032904 lncRNA downstream 120918 44276534 ~ 44282837 (-) True XLOC_016781
TCONS_00032886 lncRNA downstream 568253 43825615 ~ 43835502 (-) False XLOC_016775
TCONS_00033928 lncRNA downstream 695802 43707467 ~ 43707953 (-) False XLOC_016773
TCONS_00033401 lncRNA downstream 773672 43629753 ~ 43630083 (-) True XLOC_016770
TCONS_00033927 lncRNA downstream 831995 43569686 ~ 43571760 (-) True XLOC_016766
TCONS_00033929 lncRNA upstream 155892 44562014 ~ 44563193 (-) True XLOC_016787
TCONS_00033930 lncRNA upstream 638360 45044482 ~ 45045520 (-) True XLOC_016796
TCONS_00033931 lncRNA upstream 646415 45052537 ~ 45067186 (-) True XLOC_016797
TCONS_00033932 lncRNA upstream 688895 45095017 ~ 45098398 (-) True XLOC_016799
TCONS_00032923 lncRNA upstream 693052 45099174 ~ 45099504 (-) True XLOC_016800
TCONS_00032907 mRNA downstream 5144 44383175 ~ 44398611 (-) True XLOC_016784
TCONS_00032906 mRNA downstream 34931 44366972 ~ 44368824 (-) True XLOC_016783
TCONS_00032905 mRNA downstream 59434 44301276 ~ 44344321 (-) True XLOC_016782
TCONS_00032903 mRNA downstream 120956 44269538 ~ 44282799 (-) False XLOC_016781
TCONS_00032902 mRNA downstream 120959 44263833 ~ 44282796 (-) False XLOC_016781
TCONS_00032912 mRNA upstream 291446 44697568 ~ 44720551 (-) True XLOC_016788
TCONS_00032913 mRNA upstream 319428 44725550 ~ 44746723 (-) True XLOC_016789
TCONS_00032914 mRNA upstream 343079 44749201 ~ 44777679 (-) False XLOC_016790
TCONS_00032915 mRNA upstream 343781 44749903 ~ 44777592 (-) False XLOC_016790
TCONS_00032919 mRNA upstream 537274 44943396 ~ 44946094 (-) True XLOC_016793
TCONS_00032894 other downstream 204058 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032856 other downstream 1441411 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032848 other downstream 1698822 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032837 other downstream 1987967 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 2028646 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032911 other upstream 116734 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 351927 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032917 other upstream 356960 44763082 ~ 44763375 (-) True XLOC_016791
TCONS_00032918 other upstream 368153 44774275 ~ 44774595 (-) True XLOC_016792
TCONS_00032922 other upstream 667672 45073794 ~ 45073910 (-) True XLOC_016798

Expression Profile

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