XLOC_016998 (CABZ01110881.1)


Basic Information

Item Value
gene id XLOC_016998
gene name CABZ01110881.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 58115123 ~ 58142854 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033175
ATGGAGAATTTAATATCAATAAACTGCGTTCAGCTTCTCATTACAGCGCTATTTTACACATGTATATCGTGCAGTTCAGTAGAACAGAAGATCTACGTCGAACTCAATAAAACTGCCCCGTGTGTCCGGCTGCTGAACGCCACGCATCAGATCGGCTGCCAGTCCTCTATATCAGGAGATACGGGCGTTGTTCATGTGCTGGAGAGCGAATCAGACCTGGACTGGATCCTCAGCGCTGGTCCTCATCCACCCTACATGGTCATCATGGAAACCGCCTTCTTCAATAGacaaagcaCAATATCAGATGTCAGCTTCCCAATGTCTTATAATGAACTTGTGATCTGAATACTGTCTCTcattgtttaatgtgtgtgtgtgtgtgtgttttcctcatGTTTCAGGTGTGTATTCTGCGGGTAGCGAGTTTGCGAACTGTAACGGGACCGTCTGGAATCCTCTGGGAAACGGGTTATCCTATGAAGACTTCACTTTCCCTGTGTTTGCTCTGAAAGACGAGAATCAGACGCAGGTCATACGGAAGtgttatGAGGATCATAATCTGCGTGTGAACGGCAGCGCTCCTCATTATCCGCTGTGTGCCATGCAGCTCTTCTCACACATGCACGCAGTGACCGACACCGTCACCTGCATGAGGCGCACAGACCTGCAGAACAAATTCAGCATCAacccagACATACATTCACACCCACtcaattacacacaaacacactcacttttacatgcaaacacacactcacagatttacatgcacacacacacacacacacgcacatgcacagataaacacacacatacaaacacacattcattcgCTCACTCACtgacaaacacgcacacacatacacaaacacaactcacttttacatgcaaacacacactcacagatttacatgcacacacacacacacacgcacacacacacacatgcacacacatacacacacacacaaacacacattcacacacacactcactgacaaacacacacacacactcttacataaacacacactcttacaaacacacacacaGTGGGTCTGCGTGGCGGTCGGGATGTCTGGATACACTCTGACCCCGTGTCTCGTCGCAACAGCAGCATGGAGAAGCAGGTGTCAGAGATGATCAGGGCTGTAAACTCCAGCGCTGCGGGTCTGAACATTAATCTGCAGGAGCCGTCGGTCAGTCAGCCGCTGCCGCCTTCATCCTTCCAGCGATTTCTGAGAGTCCGGCCGATCCCAGGCCTGGTGCTTACCGACCACGAGAAGGCCTTCAACAACAGGTCTCAGAACAGCTCACTAAACAATTACAACCAcaacatcaatcaatcaaccaaccaacctttatttatatatcaGCCTACTAcaaccaaaTCTCTGGCTGAAGTGGCCACGCTAGTCGCTCGCTCGCTCTACACACAAGCTGGAGGAGAGCAGAACAATCTCAGCAACATCACTGCTGATGCCACTatgGTCTCTCAGCTGCTGTATGGTTTTCTGGTGCAGAAGAATAACAGCTGGTTTCGCTCTCTGCTTCCTCCTGAAATCACTAAAAAAGGAGGCAGCAGCATTTTGAGTTCTGGTCCTCCTCAGTTCTACATTGGTCTGGGTCCGCGGCTGCAGAGTCCTGTTCACAGCGTGACGCTCTTTGTTCAGTACATTCTGGCCAATCTGACGGGCAACGTCACCAACCTGACCGAGAGCCAGTGCCAAAACCCCAAAGAGCTGAGCGGCGAGAACAAAGACctgtACTCGTATTTCTGGGTGTCTGGTCCATCGTCG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103284

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033175 True 1799 mRNA 0.49 13 58115123 58142854

Neighbor

gene id symbol gene type direction distance location
XLOC_016997 NA coding downstream 5549 58090321 ~ 58109574 (-)
XLOC_016996 fcer1gl coding downstream 29679 58077662 ~ 58085444 (-)
XLOC_016995 nectin4b coding downstream 39709 58026496 ~ 58075414 (-)
XLOC_016994 si:dkeyp-68b7.12 coding downstream 123485 57953239 ~ 57991638 (-)
XLOC_016993 si:dkeyp-68b7.5 coding downstream 173260 57925518 ~ 57941863 (-)
XLOC_016999 si:ch1073-185p12.2 coding upstream 30193 58173047 ~ 58183499 (-)
XLOC_017000 pnp5b coding upstream 43992 58186846 ~ 58201176 (-)
XLOC_017001 NA coding upstream 69695 58212549 ~ 58213192 (-)
XLOC_017002 foxl2b coding upstream 113422 58256276 ~ 58257624 (-)
XLOC_017003 AL954696.2 coding upstream 129224 58272078 ~ 58340517 (-)
XLOC_016989 NA non-coding downstream 303309 57801654 ~ 57811814 (-)
XLOC_016988 NA non-coding downstream 362219 57730336 ~ 57752904 (-)
XLOC_016986 NA non-coding downstream 528926 57581671 ~ 57586197 (-)
XLOC_016985 NA non-coding downstream 534833 57490867 ~ 57580290 (-)
XLOC_017006 NA non-coding upstream 293906 58436760 ~ 58441495 (-)
XLOC_017010 CABZ01081294.1 non-coding upstream 493822 58636676 ~ 58636792 (-)
XLOC_017011 NA non-coding upstream 616056 58758910 ~ 58763285 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01037720_00000414_00003144 NCSTN coding CI01037720 null 381 ~ 3144 (-)