XLOC_017023 (ftr36)


Basic Information

Item Value
gene id XLOC_017023
gene name ftr36
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 59135878 ~ 59145027 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033198
GGTGGTTTTACAAAATTCAAAAGAAAGTAGGAGAAATGAGAAAAAAACGGGAGAGAGAAGATAATAATATCTAGGATGAGATTTGGACACACAAAAGTAATTAGTACACTTTTTAAGCTGGGTATATATGGTACAGGATAATGTGAGTTTTGTGGACAAGAAGAGACGGTAGAACATGTTAAACTACACTGCATGAAGTCTGAAGATGAAAGGAGGAAAATTAGTAAGTATTTAGGAGAGATAACAGTTCAACTCAAATTAGATGACATTCTACTAAATAAATCaggaaataaatattttacctttttattgcagtatcttaaaaatatcttaaaaatactCATTTGTGGCAGATGCGGGTTAagtcatgatgatccacactccAGACCAGGTGGTGGCGCAAATACACCATTTTGTTGTTTGTCAACCGCCATTAAATTGAAGAAGAAGAAGccagtgttgtgtgtgttgtgtcgaTGCCTCTCTCGGTCTGTGCGTGTGAGCTGTAAAATGGCAGAATTCAGTGTTTCTGTGGCTCAGGATCAGTTCAGCTGTGCGGTGTGTCTGGATCTCCTAAATGATCCGGTCTCCATTCCGTGTGGACACAGTTACTGTATGAGCTGCATCACAGACTGCTGGAATAAGAAGAGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCAGCCCCAGACCCGCTTTAGCTAAAAACACCATGCTGGCTGAAGTGCtggagaaactgcagaagagcaaACTACAAGCTGCTGGTCCTGCTCAGAGTCCCGCTGCATCTGGAGATGTGGAGTGTGACGTCTGTACTGGAGCCAAAAACAGAGCCGTCAAGTCCTGTCTGGTGTGTCTGAACTCTTACTGTCACACTCATTTTCAGCTCCATCAAGAGATTCACCCAGGAAATCAACACCAACTGACTGAAGCTACTCACAGATTGAAGGAGATGATCTGTCCTCAACATGAGAAACTCCTGGAGATCTTCTGCCGCACTGATCACTGCTGTATTTGTTATCTGTGTTTGGTTGATCAACACAAACACCATGACACTGTTTCAGCTGCAGCAGAGAGGACTGAACTAGAGAGTCGGCTGAGGGAAACCCAGAGCAGATTCCAGCAGAGACTCCAGGAGAGACAGAAGGAGCTGGAGGAGCTGAGAGAGGCTGTGGAGTCTCACAAGcGCTCTGCACAGGCCGCAGTGGACCACACCGAGAGGATCTTCACTCAGCTCATCTGCTGGATTGAGAGAAGCCGCTCGGAGCTCACGCAGATGATCAGAGATGGAGAAAAGACTGCAGTGAGTGGAGCTGAAGAACGACTGGAGCGACTGGAGCAGGAGATCAATGATCTGAGGAGGAGAAACGCTGAGCTGGAGCAGCTTTCACACACAGAAGATCACATCCATTTCCTCCAGagtttgcagtCTCTCTCTGTCCCTCCTGGATCTACAGACTCATCCAGCATCACTGTCAGCTTTCCACTCGATTTTGATGATATTGTTAAATCTGTGTCTCGTCTGAGAGACAAACTGCAGCAGTTCTGCACTGAGGAGATGAAGACCATATCTAGCAGAGTGAGCAGCATTAGCAGGATTCCCGCTCCTGAACCACAGACCCGTGAGCAGTTCCTCCAGTATTCTCAACAGTTCACTTTGGATCCAAACACAGTCAATAACTGGCTGGTTCTGTCTGAAGGAAACACAGCGGTGGAAAATAAAGGTTCAGtccagccgtatcctgatcatccagacagatttgattattGGCGTCAGGTGTTGtgtagagagagtgtgtgtggacgctctTACTGGGAGCTGGAGTGGAGCGGTGCACGTGTGTTTCtctcagtgtcatataagagcatcaagAGAAAAGGACGGGGTAATGAGTGTCTGTTTGGACgcaatgctcagtcctggagtttgtccTGCTCTGCTGAGAGTTTCTCATTCAGGCATAATAACAAAAACACTGAACTCCCTAAACCCTCCGTCAGCTGCTCTAGAATAGGAGTgtatgtggatcacagtgcaggaactctgtccTTCTACAGCGTCTCTGACACAACAATGAGCCTCATACACACACTCcacaccacattcacacacacaaacacactctgtcCTGGATTCTATGTTTATAAAGGTTCAAAAGTGAAGCTCTGTGATCTGACAGTGTAGATGATGCAGATCCTCCGTGTACAATAATGTGGAAAATACTCCAAATATCAGTCTTGCTTTATTTGTGATGTTTATAATAAACTGACTTTAAAAATTAACACTGATTTTATTCATCATTTGTGTTCATAAGTTGTCCTGAAGTGTGATTGTAGAGATGTGTTGATGTTTTGGCTGATTGTTGTTCATATTTAAATCATCAGCACATCAGCTCCAGATTGAGAAAGGCCAATATAACAGATCAATATATACTGAAGTATGGAGTTGTGTAATGTCTGCTGCATAATCCTCTCTGTAAAACAACACAGCACTGGGCCAAACTAAATGAGAAAAGTGTTGTGTTGAGAACACTGATATAGAGAGTTTTCCTCTGCTCATGTTGATGACAGTGATCTACTTTTCACAGCAGTGTCTGTTCAGTTGCTCATTTCCTCTTTAAATGCAGATCGTCTTGTTCTTTGTTTAATCATCAGTTGTTCATTATGGAgtatttgtgtttataaatgcaGATTGTGATGGTTTTGTTTAATAAAGAACTGTTAAATGTCTTCTGAGTTTTTCGATGTGTTTTTATGAAATTACAGtttttcccaattgtttacacacattttctgtaagcaggtctcatattgtcagaactctacacacaaatcacaaaacacacacacattgggcaaaactcttcgTTCAAAACagtgtgatttcttctcaaaatggtcttttgttttcaaatgacacacacaagccatcacGTCAATAGATAATTATAAGAACAGTTGAActgatgtgcttaatgtaaaacactatgaccacttCTTCTCCGTTCATCATAATGACTTAGTGTAAGCCTTTTCATGTTCAGTGTTATACTTACTACATAAGCCTACAGAAgtgtttttttacaaaacaagcaaatatcaaatatattttactgtatttttcccACAAAAACAGTGTACACAGTGTTCGTC

Function

symbol description
ftr36 Predicted to enable zinc ion binding activity. Acts upstream of or within defense response to virus. Located in cytoplasm. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region.

GO:

id name namespace
GO:0051607 defense response to virus biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-483 Predicted to enable zinc ion binding activity. Acts upstream of or within defense response to virus. Located in cytoplasm. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region.

Ensembl:

ensembl_id ENSDARG00000111722

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033198 True 3155 mRNA 0.42 6 59135878 59145027

Neighbor

gene id symbol gene type direction distance location
XLOC_017022 NA coding downstream 15038 59093307 ~ 59120840 (-)
XLOC_017021 NA coding downstream 46443 59086464 ~ 59089435 (-)
XLOC_017020 NA coding downstream 52264 59075775 ~ 59083614 (-)
XLOC_017019 CU914601.1 coding downstream 97566 59038195 ~ 59038312 (-)
XLOC_017018 NA coding downstream 210362 58922622 ~ 58925516 (-)
XLOC_017024 ftr32 coding upstream 9561 59154588 ~ 59157790 (-)
XLOC_017025 ftr95 coding upstream 29845 59174872 ~ 59178801 (-)
XLOC_017026 ftr30 coding upstream 45639 59190666 ~ 59205441 (-)
XLOC_017027 ftr29 coding upstream 76921 59221948 ~ 59231111 (-)
XLOC_017028 ftr32 coding upstream 100213 59245240 ~ 59247811 (-)
XLOC_017033 BX537288.1 non-coding upstream 190754 59335781 ~ 59336963 (-)
XLOC_017036 NA non-coding upstream 234139 59379166 ~ 59390464 (-)

Expression


Co-expression Network