XLOC_017026 (ftr30)


Basic Information

Item Value
gene id XLOC_017026
gene name ftr30
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 59190666 ~ 59205441 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033203
TTGTCGGTGTTGGGTGTGTTGAGTCGGTGTCTCTGTATGAGCAGTAAAATGGCAGAATCCAGTGTTTCTTGGGCTCATCATTTCAGCTGTTCGGTGTGTCTGGATCTCCTGAAGGATCCAGTCTCCATTCCGTGTGGACACAGTTACTGTATGAGCTGCATCACAGACTGCTGGAATCAGGAGGATCAGAAGAGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCAGCCCCAGACCCGCTTTAGCTAAAAACACCATGCTGGCTGAAGTGCTGGAGAAACAGCAGAAGAGCAAACTACAAGCTGCTGGTCCTGCTCAGAGTCCCGCTGCATCTGGAGATGTGGAGTGTGACGTCTGTACTGGAGCCAAAAACAGAGCCGTCAAGTCCTGTCTGGTGTGTCTGAACTCTTACTGTCACACTCATTTCCAGCTACATCAACAACTGAATCCGGGAAATCAACACAAAGTGATTGAAGCCACTCATAAACTGCAGGAGATGATCTGTCCTCAACACAAGAAACTCCTGGAGATCTTCTGCCGCACTGATCACTGCTGTATTTGTTATCTGTGTATGGTGGATCAACACAAACACCATGACACTGTTTCAGCTGCAGCAGAGAGGACTGAACTACAGAGTCGGCTGAGGGAAACCCAGAGCAGATTCCAGCAGAGACTCCAGGAGAGACAGAAGGAGCTGGAGGAGCTGAGAGAGGCTGTGGAGTCTCACAAGcGCTCTGCACAGGCCGCAGTGGACCACACCGAGAGGATCTTCACTCAGCTCATCTGCTGGATTGAGAGAAGCCGCTCGGAGCTCACGCAGATGATCAGAGATGGAGAAAAGACTGCAGTGAGTGGAGCTGAAGAACGACTGGAGCGACTGGAGCAGGAGATCAATGATCTGAGGAGGAGAAACGCTGAGCTGGAGCAGCTTTCACACACAGAAGATCACATCCATTTCCTCCAGagtttgcagtCTCTCTCTGTCCCTCCTGGATCTACAGACTCATCCAGCTTTATTAGCAGCTCGCAGCTCGCTTTTGATCAACTTGCTGAATCTGTGTCTCGTCTGAGAGACAAACTGCAGCAGTTCTGCACTGAGGAGATGAAGACCATATCTAGCAGAGTGAGCAGCATTAGCAGGATTCCCGCTCCTGAAGCACAGACCCGTGAGCAGTTCCTCCAGTATTCTCAACAGTTCACTTtggatccaaacacagtgaataaCTGTCTGGTTCTGTCTGAAGGAAACACAGCGGTGGATTATAAAGATTCAGtccagccgtatcctgatcatccagacagatttgattgtTCGTATCAGGTGTTTtgtagagagagtgtgtgtggacgctctTACTGGGAGCTGGAGTGGAGCGGTGTTGTGTAtttatcagtgtcatataagagcatcagcagGAAGGGACGGAATATTGAGTGTGGATTTGGAAACAAtgatcagtcctggagtttggAGTGCTCTCCTTACAGtttctcattctggcataataaaataaagactGCTCTCCCTAAACCCTCCGTCAGCTCCTCTAGAATAGGAG
>TCONS_00033204
ATGGCAGAATCCAGTGTTTCTTGGGCTCATCATTTCAGCTGTTCGGTGTGTCTGGATCTCCTGAAGGATCCAGTCTCCATTCCGTGTGGACACAGTTACTGTATGAGCTGCATCACAGACTGCTGGAATCAGGAGGATCAGAAGAGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCAGCCCCAGACCCGCTTTAGCTAAAAACACCATGCTGGCTGAAGTGCTGGAGAAACAGCAGAAGAGCAAACTACAAGCTGCTGGTCCTGCTCAGAGTCCCGCTGCATCTGGAGATGTGGAGTGTGACGTCTGTACTGGAGCCAAAAACAGAGCCGTCAAGTCCTGTCTGGTGTGTCTGAACTCTTACTGTCACACTCATTTCCAGCTACATCAACAACTGAATCCGGGAAATCAACACAAAGTGATTGAAGCCACTCATAAACTGCAGGAGATGATCTGTCCTCAACACAAGAAACTCCTGGAGATCTTCTGCCGCACTGATCACTGCTGTATTTGTTATCTGTGTATGGTGGATCAACACAAACACCATGACACTGTTTCAGCTGCAGCAGAGAGGACTGAACTACAGAGTCGGCTGAGGGAAACCCAGAGCAGATTCCAGCAGAGACTCCAGGAGAGACAGAAGGAGCTGGAGGAGCTGAGAGAGGCTGTGGAGTCTCACAAGGTGAGTTTGAGCAGAAGAACAGCAGCTGAAGAGcacacacacacacacacacacacacacatgtaa
>TCONS_00033205
ATGGCAGAATCCAGTGTTTCTTGGGCTCATCATTTCAGCTGTTCGGTGTGTCTGGATCTCCTGAAGGATCCAGTCTCCATTCCGTGTGGACACAGTTACTGTATGAGCTGCATCACAGACTGCTGGAATCAGGAGGATCAGAAGAGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCAGCCCCAGACCCGCTTTAGCTAAAAACACCATGCTGGCTGAAGTGCTGGAGAAACAGCAGAAGAGCAAACTACAAGCTGCTGGTCCTGCTCAGAGTCCCGCTGCATCTGGAGATGTGGAGTGTGACGTCTGTACTGGAGCCAAAAACAGAGCCGTCAAGTCCTGTCTGGTGTGTCTGAACTCTTACTGTCACACTCATTTCCAGCTACATCAACAACTGAATCCGGGAAATCAACACAAAGTGATTGAAGCCACTCATAAACTGCAGGAGATGATCTGTCCTCAACACAAGAAACTCCTGGAGATCTTCTGCCGCACTGATCACTGCTGTATTTGTTATCTGTGTATGGTGGATCAACACAAACACCATGACACTGTTTCAGCTGCAGCAGAGAGGACTGAACTACAGaactgccttaatccttcatatcataaattcaacaagatactggaaatattcctcagagattttttgcagcagatcgtcttgaccatgtctacatgcctaaatgcattgagttctgACTATTACAGCTTTACAGTGACGTTTATTTAA

Function

symbol description
ftr30 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0000785 chromatin cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-106 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

Ensembl:

ensembl_id ENSDARG00000095448

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033203 False 1561 mRNA 0.49 6 59190666 59205441
TCONS_00033204 False 750 mRNA 0.50 3 59202755 59205393
TCONS_00033205 True 735 mRNA 0.46 3 59204086 59205393

Neighbor

gene id symbol gene type direction distance location
XLOC_017025 ftr95 coding downstream 11865 59174872 ~ 59178801 (-)
XLOC_017024 ftr32 coding downstream 32876 59154588 ~ 59157790 (-)
XLOC_017023 ftr36 coding downstream 45639 59135878 ~ 59145027 (-)
XLOC_017022 NA coding downstream 69826 59093307 ~ 59120840 (-)
XLOC_017021 NA coding downstream 101231 59086464 ~ 59089435 (-)
XLOC_017027 ftr29 coding upstream 16507 59221948 ~ 59231111 (-)
XLOC_017028 ftr32 coding upstream 39799 59245240 ~ 59247811 (-)
XLOC_017029 ftr33 coding upstream 49752 59255193 ~ 59265537 (-)
XLOC_017030 ftr34 coding upstream 73400 59278841 ~ 59285407 (-)
XLOC_017031 ftr35 coding upstream 89819 59295260 ~ 59303406 (-)
XLOC_017020 NA non-coding downstream 107052 59075775 ~ 59083614 (-)
XLOC_017019 CU914601.1 non-coding downstream 152354 59038195 ~ 59038312 (-)
XLOC_017018 NA non-coding downstream 265150 58922622 ~ 58925516 (-)
XLOC_017033 BX537288.1 non-coding upstream 130340 59335781 ~ 59336963 (-)
XLOC_017036 NA non-coding upstream 173725 59379166 ~ 59390464 (-)

Expression


Co-expression Network