XLOC_017027 (ftr29)


Basic Information

Item Value
gene id XLOC_017027
gene name ftr29
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 59221948 ~ 59231111 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033206
CAGTCATCAGTGCGTTGTGTCCATGTTTaactctgtctgtgtgtgtgagcagtaaaATGGCAGAATCCAGTGTTTCTGTGGCTCATCGTGAGTTCAGCTGTGCGGTGTGTCTGGATCTCCTGAAGGATCCAGTCTCCACTGCCTGTGGACACAATTACTGTATGAGctgcatcacaaactgctggaATCAGGAGGATCAGAAGAGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCAGCCCCAGACCCGCTTTAGCTAAAAACACCATGCTGGCTGAGATGGTGGAGAAACTGCGGAAGAGCAAGCTACAAGCTGCTGGTCCTGCTCAGAGTCCCGCTGCATCTGGAGATGTGGAGTGTGACGTCTGTTCTGGAGCCAAAAACAGAGCCGTCAAGTCCTGTCTGGTGTGTCTGAACTCTTACTGTCACACTCATTTCCAGCTCCATCAACAACTGAATCCAGGAAATCAACACAAAGTGACTGAAGCCACTCACAGATTGAAGAAATTGATCTGTCCTCAACATGAGAAACCCCTGGAGATCTTCTGCCGCACTGATCACTGCTGTATATGTTATCTGTGTACAATGGATCAACACAAAAACCACAACACTGTTTCAGCTGTAGCAGAGAGGACTGAACAACAGAGACGCCTAAAGAACATCCAGAGCAGTTTCCAGCAGAGACTCCAGGAGAGACAGAAGGAGCTGGAGGAGCTGAGAGAGGCTGTGGAGTCTCACAAGCGCTCTGCACAGGCCGCAGTGGACCACACCGAGAGGATCTTCACTCAGCTCATCTGCTGGATTGAGAGAAGCCGCTCGGAGCTCACGCAGATGATCAGAGATGGAGAAAAGACTGCAGTGAGTGGAGCTGAAGAACGACTGGAGCGACTGGAGCAGGAGATCAATGATCTGAGGAGGAGAAACGCTGAGCTGGAGCAGCTTTCACACACAGAAGATCACATCCATTTCCTCCAGagtttgcagtCTCTCTCTGTCCCTCCTGGATCTACAGACTCATCCAGCTTTATTAGCAGCTCGCAGCTCTCTTTTAATAAAGTTACTGAATCTGTGTCTCGTCTGAGAGACAAACTGCAGCAGTTCTGCACTGAGGAGATGAAGACCATATCTAGCAGAGTGAGCAGCATTAGCATCATTCCCGCTCCTGAACCACAGACCCGTGAGCAGTTCCTCCAGTATTCTCAACAGTTCACTTTGGATCCAAACACAGCGCATACATATCTGGTTCTGTCTGAAGGAAACACAGCGGTGGAAAATAAAGGTTCAGtccagccgtatcctgatcatccagacagatttgattgtTGGCATCAGGTGTTGtgtagagagagtgtgtgtggacgctctTACTGGGAGCTGGAGTGGAGCGGTGTTGATGTGttaatatcagtgtcatataagagcatcagcagGAAGGGTTCGGGTAATGAGTGTCTGTTTGGACTCAAtgatcagtcctggagtttgtgcTGCTCTGCTGACAGTTTCTCATTCtatcataataatataaagaCTGATCTCCCTAAACCCTCCGTCAGCTCCTCTAGAAGAGGAG
>TCONS_00033207
ATGGCAGCTGAAGAGGCGTTTCAGACTCAAGTGCCATTTCAGAGCCCCACCCCTTTAAAAGTAGGAAATCTTGAGAGAATCCGAAAGCAACAATCAGTCATCAGTGCGTTGTGTCCATGTTTaactctgtctgtgtgtgtgagcagtaaaATGGCAGAATCCAGTGTTTCTGTGGCTCATCGTGAGTTCAGCTGTGCGGTGTGTCTGGATCTCCTGAAGGATCCAGTCTCCACTGCCTGTGGACACAATTACTGTATGAGctgcatcacaaactgctggaATCAGGAGGATCAGAAGAGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCAGCCCCAGACCCGCTTTAGCTAAAAACACCATGCTGGCTGAGATGGTGGAGAAACTGCGGAAGAGCAAGCTACAAGCTGCTGGTCCTGCTCAGAGTCCCGCTGCATCTGGAGATGTGGAGTGTGACGTCTGTTCTGGAGCCAAAAACAGAGCCGTCAAGTCCTGTCTGGTGTGTCTGAACTCTTACTGTCACACTCATTTCCAGCTCCATCAACAACTGAATCCAGGAAATCAACACAAAGTGACTGAAGCCACTCACAGATTGAAGAAATTGATCTGTCCTCAACATGAGAAACCCCTGGAGATCTTCTGCCGCACTGATCACTGCTGTATATGTTATCTGTGTACAATGGATCAACACAAAAACCACAACACTGTTTCAGCTGTAGCAGAGAGGACTGAACAACAGAGACGCCTAAAGAACATCCAGAGCAGTTTCCAGCAGAGACTCCAGGAGAGACAGAAGGAGCTGGAGGAGCTGAGAGAGGCTGTGGAGTCTCACAAGGTGAGTTTGAGCAGAAGTCAAGTCCAGAACTTTATTTCCCATATGTACCTGCCTATAAGTAAAGAGGAATTATTTGTGCAAAGTCAAAAAGAGCAGCTTGTAAAACAATACACATAAGATATAAAACTTACATATACATTTACAAAAGATTAAAATACACACGTACATGTCTATATTGCACTTGAGTTCTTTTCAATTAACATGAAGTCAGTTTGATTCTTCCTATGAAATGTTTGCCATCAGTCTAACTGTGGCAGGAAAAAACTAATAAATGCAACTCTGGTGTGTAATGAAATTGTCTGCTCTCTTTCTTCTCAGAATGTTTGTGCCTGAGTAACATGTGAGCAGGGTACTGAGTGTCTCTAGTGATGTTTAGGGCCTGTTATTTTTGCAACATGTTTTGTACAGAAAGTTCATGGAAGGAAGATCAGCCCTAATGATCCTCTCTGCAGTCTCGACAGACTTCTGCAGAGCCTTCCTCTCTGCCTGATTGGTGTCACATTACCAAACCATAATGCCAGTAGTGAGGATGCTCTCCACTAGTCCCCTGTATGCTAGTGTGAGTGGATGAAAACTCAGCCTGGTATTCTTGAGCAGTCTAATAAAGTAAAGCCTTTCCTGGGCTTCTTCACCAGGGCAGTGGTGTGGTGAACTCAGGTTGGATGTCAACTCCTAACCAAGTAACCTGTCTCCTCTCTCCACCTCTGTCTCTTTGATGAGGAAGGACTCCAAAGGGAGGGCTTTCTTCCTAAAGACTGTGACAACCTCCTTGTTTTTATCTATGTTAAGGATAAGATTGTTGTCCTCTCCACAGACAATGGTATCTTTCAGTACATTCCTATGGCCCTTCTTGTTCCTATGTCTGATGAGACCCAGGATCGTGGTGCATCAACGTACTTGATGACGGACGATGGTGTCATCTCAGGTGGAAACACAGTCATTTGTATAGAAGGGAAAGGGTTTGGGGCTGAGACAGCAGCCCTGTGGTGAGCCTGTACTGACTGTAAGCACTGAGTTTTCCTCCGATCCTTACCACCTGTGGTTTATTCAATGGGAAGTCCAGAATCTAATAACAAGTGGTGGTCGAGATGCCAAGATCATGTAATTTTACAGTTAGCTTTTGTGGGCGTATGGTATTAAATGCAGAGCTATAGCCCAGGAAAAGCAGTATGCTCTGCTGCCATCCAGGTGTTGTAGGGTATGGTGGAGAGCCAGGGGAACAGCATCATCCACTTATGTATCGGCACATTAGGCAAACTGTAGCAGGTCAACAGTGTTGATGTATGTAAGGATGAATTTCTGCAGACGCTTCATGGCAACTGCTGTAATTGCCATCGGGGTGTAGTCATTGTATGCGGTTGCTTTTAATGCCTTGTAGAGTGGAATAATAATGCTGGTTTTAAAAATACGGGTGTCCAAGGTCTGTGTTACTGACTGACAAATAAGAGTGTACACACCTGCAAATTCTGCACAGGCTCTAAGGACTTTGATTGAAACCCCACTCTGATCTGTTGACTTGTGTGGACTCACCTGCTTCAGAGCCCTCTGGACCTGTGCATGTGTCACCTGCAGTGTGATGTCCTCAGGATCATGGGGGCTTTTTTGGGATATCTGTGTTTATTTGATCAAACCTGGCATAAAACCATTTAGGAATTTAGGAAGTGTAGTGACACTAACCATCACATCTGTACTCTTCCTGTAGTTTGTGACAGACCAGATTCCCTGCCACATGCTATGTGTTATTTGTCAGAGAGTGTTCTTCAAGTTGATAGATTGTATACCTTGTTTCATACAATCTCCCTGTAAGAACTTGGGTCAACTTACCGTATTTTACGCACTATAAAGCGCACCGGATTATAAGACGCAGTCTCAATTACGGGGTCTATTTCTGTACTTAACCCATACATAAG

Function

symbol description
ftr29 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0000785 chromatin cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-159 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

Ensembl:

ensembl_id ENSDARG00000075355

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033206 False 1575 mRNA 0.49 6 59221948 59231017
TCONS_00033207 True 2747 mRNA 0.45 2 59227546 59231111

Neighbor

gene id symbol gene type direction distance location
XLOC_017026 ftr30 coding downstream 16507 59190666 ~ 59205441 (-)
XLOC_017025 ftr95 coding downstream 43147 59174872 ~ 59178801 (-)
XLOC_017024 ftr32 coding downstream 64158 59154588 ~ 59157790 (-)
XLOC_017023 ftr36 coding downstream 76921 59135878 ~ 59145027 (-)
XLOC_017022 NA coding downstream 101108 59093307 ~ 59120840 (-)
XLOC_017028 ftr32 coding upstream 14129 59245240 ~ 59247811 (-)
XLOC_017029 ftr33 coding upstream 24082 59255193 ~ 59265537 (-)
XLOC_017030 ftr34 coding upstream 47730 59278841 ~ 59285407 (-)
XLOC_017031 ftr35 coding upstream 64149 59295260 ~ 59303406 (-)
XLOC_017032 ftr36 coding upstream 81665 59312776 ~ 59327299 (-)
XLOC_017021 NA non-coding downstream 132513 59086464 ~ 59089435 (-)
XLOC_017020 NA non-coding downstream 138334 59075775 ~ 59083614 (-)
XLOC_017019 CU914601.1 non-coding downstream 183636 59038195 ~ 59038312 (-)
XLOC_017018 NA non-coding downstream 296432 58922622 ~ 58925516 (-)
XLOC_017033 BX537288.1 non-coding upstream 104670 59335781 ~ 59336963 (-)
XLOC_017036 NA non-coding upstream 148055 59379166 ~ 59390464 (-)

Expression


Co-expression Network