XLOC_017035 (ftr38)


Basic Information

Item Value
gene id XLOC_017035
gene name ftr38
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 59367429 ~ 59376735 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033218
CAGTGTTGGGTGTGTTGTGTCggtgtctctctctgtctgtgagTTTGAGCTGTATAATGGCAGAATCCAGTGTTTCTTTGGCTCATTGTAAGTTCAGCTGTTCGGAGTGTCTGGATCTCCTGAAGGATCCAGTCTCCATTCCCTGTGGACACAGTTACTGTATGAGCTGCATCACAGACTGCTGGAATCAGGAGGATCAGAAGAGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCAGCCCCAGACCCGCTTTAGCTAAAAACACCATGCTGGCTGAAGTGCtggagaaactgcagaagagcaaACTACAAGCTGCTGGTCCTGCTCAGAGTCCCGCTGCATCTGGAGATGTGGAGTGTGACGTCTGTACTGGAGCCAAAAACAGAGCCGTCAAGTCCTGTCTGGTATGTCTGAACTCTTACTGTCACACTCATTTCCAGCTCCATCAAGAACTGAATCCAGGAAATCAACACAAAGTGATTGAAGCCACTCACAGATTGAAGGAGATGATCTGCCAACAACACAAGAAACTCCTGGAGATCTTCTGCCGCACTGATCACTGCTGTATATGTTCTTTGTGTGTGCTCGATGGACATAAAAACCATGACACTGTTTCAGCTGCAGCACAGAGGACTAAAAAACAGTGTCGGCTAAAGAAAACCCAGAGCAGATTCCAGCAGAGACTCCAGGAGAGACAGAAGGAGCTGGAGGAGCTGAGAGAGGCTGTGGAGTCTCACAAGCACTCTGCACAGGCCGCAGTGGACCACACCGAGAGGATCTTCACTCAGCTCATCTGCTGGATTGAGAGAAGCCGCTCGGAGCTCACGCAGATGATCAGAGATGGAGAAAAGACTGCAGTGAGTGGAGCTGAAGAACGACTGGAGCGACTGGAGCAGGAGATCAATGATCTGAGGAGGAGAAACGCTGAGCTGGAGCAGCTTTCACACACAGAAGATCACATCCATTTCCTCCAGAGTTTCCAGTCTCTCTCTGTCCCTCCTGGATCTACAGACTCATCCAGCTTTTTTATCAGCTCACAGCTCTCTTTTAATAAAGTTACTGAATCTGTGTCTCGTCTTAGCGACAAACTGCAGCAGTTCTGCACTGAGGAGATGAAGACCATATCTGACAAAGTGAGATTCATTAGCATCATTCCCGCTCCTGAACCACAGACGCGTGAGCAGTTCCTCCAGTATTCTCAACAGTTCACTTtggatccaaacacagtgaataaaAAGCTGGTTCTGTCTGAAGGAAACACAGCGGTGGAAATAAACGGTTCAGaccagccgtatcctgatcatccagacagatttgatggttTCTCTCAGGTCTTATgtaaagagagtgtgtgtggacgctctTACTGGGAGCTGGAGTGTAGCAGTGCAAGTGTGTAtttatcagtgtcatataagagc
>TCONS_00033219
GGCCTTTGATTGGTCTTCCTCTCACGCAGTTTGGATGTTGCCAAGTCTATTAATTCCTTCACACTGACTAGAATgttgcactttatttttttacttattaaattatCTGCATATCAATGAATGGATGAGTTTAATGAGCAGAAAGTGATCACCTAAAATTCATATGAGCTTGACTAAGCATTTTAAAACGTAATAtaacttgtatatatatattcattttgcaCTGTTGTGGGTTTATTTCTGCATTAGACTGTCCTCTAGTGGCGGAGTTTGTTATAACGCACACAGGGAGGGAGTGTCAGAGTTAGAGTAATCCCGAAAAGCGAAAGCAATAATCAGTGTTGGGTGTGTTGTGTCggtgtctctctctgtctgtgagTTTGAGCTGTATAATGGCAGAATCCAGTGTTTCTTTGGCTCATTGTAAGTTCAGCTGTTCGGAGTGTCTGGATCTCCTGAAGGATCCAGTCTCCATTCCCTGTGGACACAGTTACTGTATGAGCTGCATCACAGACTGCTGGAATCAGGAGGATCAGAAGAGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCAGCCCCAGACCCGCTTTAGCTAAAAACACCATGCTGGCTGAAGTGCtggagaaactgcagaagagcaaACTACAAGCTGCTGGTCCTGCTCAGAGTCCCGCTGCATCTGGAGATGTGGAGTGTGACGTCTGTACTGGAGCCAAAAACAGAGCCGTCAAGTCCTGTCTGGTATGTCTGAACTCTTACTGTCACACTCATTTCCAGCTCCATCAAGAACTGAATCCAGGAAATCAACACAAAGTGATTGAAGCCACTCACAGATTGAAGGAGATGATCTGCCAACAACACAAGAAACTCCTGGAGATCTTCTGCCGCACTGATCACTGCTGTATATGTTCTTTGTGTGTGCTCGATGGACATAAAAACCATGACACTGTTTCAGCTGCAGCACAGAGGACTAAAAAACAGTGTCGGCTAAAGAAAACCCAGAGCAGATTCCAGCAGAGACTCCAGGAGAGACAGAAGGAGCTGGAGGAGCTGAGAGAGGCTGTGGAGTCTCACAAGGTGAGTTTGAGCAGAAGAACAGCCGCTGAAGAGGCCTTTCACACTCcaatgcttctgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgcgtgtgcgtgcgtgcgtgcgtgtgtgtctgaCAGCACTCTGCACAGGCCGCAGTGGACCACACCGAGAGGATCTTCACTCAGCTCATCTGCTGGATTGAGAGAAGCCGCTCGGAGCTCACGCAGATGATCAGAGATGGAGAAAAGACTGCAGTGAGTGGAGCTGAAGAACGACTGGAGCGACTGGAGCAGGAGATCAATGATCTGAGGAGGAGAAACGCTGAGCTGGAGCAGCTTTCACACACAGAAGATCACATCCATTTCCTCCAGGTGACACACAGGACAGTGGAAGAGCATGTGGAGCagagattgtgtttgtgtgtcttcagCTGCTGTTTCTGTTGTGTCTGTGTAGAGTTTCCAGTCTCTCTCTGTCCCTCCTGGATCTACAGACTCATCCAGCTTTTTTATCAGCTCACAGCTCTCTTTTAATAAAGTTACTGAATCTGTGTCTCGTCTTAGCGACAAACTGCAGCAGTTCTGCACTGAGGAGATGAAGACCATATCTGACAAAGGTAAGCTTTACATTTCCTAATGTCTATCATAATAAATCATGTATTGCACaatgattattaaattataaaaataaattacgaTTATGCATGTGTTTGTCTTCACAGTGAGATTCATTAGCATCATTCCCGCTCCTGAACCACAGACGCGTGAGCAGTTCCTCCAGTGTAAGTCACTCTAAATATATCAACAAACAGAATTAACTGTGCTGATTTGCTCAAATCTTGATGTTTTTATTAGCAGTGAAAGCATTCAGTtatataatgtgtttattccttctaGATGTGAATTTTGTCTCTGTTTTATAGGACACTCGCTTATAGAAACCCTTCTGAAACATACTAAACGAACATCTAaacaattttaatttcacataacctttaaatctgcaggacactaaACAGAAATGTGCTTATTTATGCTTCTGAATATTAACAGAATGTGTAGGCAAATAGATAAGTgggcataaataaaaaataataataatctagattaatctcactgtaatcttggaattaatctacactgaaaaaaatgtctgcaaaattgttgcaaacaatttttttgtgttgaatttaaacaaacaaattaaatttagtgatgctcaacttaatttatttgtttaaattcaacattaaCAAACTGTTCACAACccattaacttaaaaaaattaagtaaattcaaggaatcatctttgaaatatttttaagattaaaaaagctcatttgaattctgccgaaggcattcagaatatgtgtgcttcccaaataataagtcttaacgggtttctcaagccaggtggcgcattagaccaggggctcatctcctgtttccaaaatgcatcacaaactgcttgagaaactgttctactctgataattggtgatgaaaataaatgatgttcagtaagatgtgcttgtgtttaccCACTGcttattcagttaaacataaatgttgaacctacataagctccaaacagccatTACTGATGACCTTAATCCGCCTAAAGTCGTAacagaactaaacagaaatggaattaagatgtggagtatgcagatattagtggagTTATTGAAgcaaacaccgcaatcaaactattaccgtcatgtaggacttttcaccatattttccgacaagatccatgatgtccatgtaagcgtagtcagtagtgttttcgaagtaagtgaaagatccagaagggcatcctgctgatttggtTCAGAAGGGCACTTCtctgtcagacggctcaccggtcaggtatacatccgcactaaaatatcaaggtgaaagtcatcatagcttgcgtagaatagactcccaacccaacccaactttgagaatagattatcATTATCGGGCGATATTTTGTTTAATCGCCTGATAAGAGTCTCATGTTAACGCAGCTGATAACGACCCAccactaatttatatatatatatatatatatatatatatatatatatatacatacaaacatatacacacacacacacacacacacacacacacatacatatatatatatatatatatatatatatatata

Function

symbol description
ftr38 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0000785 chromatin cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-487 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

Ensembl:

ensembl_id ENSDARG00000095678

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033218 False 1424 mRNA 0.48 6 59367429 59376399
TCONS_00033219 True 3228 mRNA 0.40 2 59367989 59376735

Neighbor

gene id symbol gene type direction distance location
XLOC_017034 ftr37 coding downstream 21509 59339650 ~ 59345920 (-)
XLOC_017033 BX537288.1 coding downstream 30466 59335781 ~ 59336963 (-)
XLOC_017032 ftr36 coding downstream 40130 59312776 ~ 59327299 (-)
XLOC_017031 ftr35 coding downstream 64023 59295260 ~ 59303406 (-)
XLOC_017030 ftr34 coding downstream 82022 59278841 ~ 59285407 (-)
XLOC_017036 NA coding upstream 2431 59379166 ~ 59390464 (-)
XLOC_017022 NA non-coding downstream 246589 59093307 ~ 59120840 (-)
XLOC_017021 NA non-coding downstream 277994 59086464 ~ 59089435 (-)
XLOC_017020 NA non-coding downstream 283815 59075775 ~ 59083614 (-)
XLOC_017019 CU914601.1 non-coding downstream 329117 59038195 ~ 59038312 (-)

Expression


Co-expression Network