XLOC_017180 (FAM177A1)


Basic Information

Item Value
gene id XLOC_017180
gene name FAM177A1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 12702923 ~ 12722351 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034233
AGATAAAAGCTCCACCCGGTGAAGGCGGCTGATGTTATTGCACTGAGGAGTTGATACACAATAGCGATGGCAAAAATCTCATTTTTTCTCTCCAGCGTCAGTATAACTGTCCTACAGGACATGGAGCCTGACAAGATCTCTGGAAAAGAGAAGGAATATGAATGTGTGGAGCTTGGTGATCTGGACAGAAAAGAGAAGATCCCACGTCGCATTATTCATTTCTCCAGTGGTGAAACCATGGAAGAATACAGTACAGATGAGGAGGAGGACAACAAGCAGAACGCAAAGAAAGACCTTCTGTCCTCCAGAGACGCATCAAACCTGACGTTGGGCCCTTATGTTTGGTTCCACATGTGGAGAGCAGCTACATCTACTATATCTGCTTGTGACTACCTCGGTGAGCGGATGGCATCGCTTTTTGGCATCACCTCAGCTAAATACCAGTATGCCATTGATGAATACAGCAGGTCAAAGAGAGAGGTGCGACTCATACACAAGTCtgagttaacaaaaataatggCTTAACAAAGATGGGATTTTGTTCAAAATTTAATGCCAGCTGGACAGGCTctaaaaaagatgttttatgtTCTTGTTTGTAATATATAAAGTAATCTGTATTtactgttgttttgttgttttctcCATAGTGCGATTTGCAATTAACTGTATTAAAATCAGTAAAAATTGTGCCCAAAA

Function

symbol description
fam177a1 Orthologous to human FAM177A1 (family with sequence similarity 177 member A1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070928-21 Orthologous to human FAM177A1 (family with sequence similarity 177 member A1).

Ensembl:

ensembl_id ENSDARG00000100439

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034233 True 699 mRNA 0.41 4 12702923 12722351

Neighbor

gene id symbol gene type direction distance location
XLOC_017179 NA coding upstream 20783 12642740 ~ 12682140 (+)
XLOC_017178 NA coding upstream 97090 12597008 ~ 12605833 (+)
XLOC_017177 BX322618.1 coding upstream 494806 12203762 ~ 12208117 (+)
XLOC_017176 NA coding upstream 717708 11980778 ~ 11985215 (+)
XLOC_017175 NA coding upstream 786636 11911552 ~ 11916287 (+)
XLOC_017181 BX547930.4 coding downstream 108097 12830448 ~ 12839993 (+)
XLOC_017182 BX547930.1 coding downstream 184882 12907233 ~ 12909125 (+)
XLOC_017183 BX547930.3 coding downstream 246563 12968914 ~ 12974721 (+)
XLOC_017184 BX547930.2 coding downstream 278717 13001068 ~ 13003183 (+)
XLOC_017185 dtl coding downstream 419057 13141408 ~ 13174165 (+)
XLOC_017189 NA non-coding downstream 918594 13640945 ~ 13665051 (+)
XLOC_017194 NA non-coding downstream 1292461 14014812 ~ 14041218 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_04199737_04203141 NA coding CI01000051 null 4199059 ~ 4203141 (-)