XLOC_017362


Basic Information

Item Value
gene id XLOC_017362
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 27108706 ~ 27113992 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036597
aataaacaaacaccaCTTGCACAGACACAAGCATTATAactcaaaactatttattttcaagACATTAGTCACCTAATTGCAGAGTAAAGTTCATAACTACACCGGCCAAAGAAAAGAATAGAAAAATAGACACTTTCCACAACTCCacaaaagaatgttttttttgtgtgtgtgtgtgtatatacagaaatatacatacacacacacaaagtctcAAATAGATATcgcatgttttatatatatttataaaaaactttacattttacatACAACAAAACACCATATTTCTGAGGCCTGTGATCAAAGGTAccaaaaatcttgaaaaatatcttttttttttggaggaaaaaaaaaagagacaaaataaaCATTATGCACACTAAGCGTTGGCTACAGTATTACAAAGAGAAGGTTTAACAGAGGTTTGTAGAAAGGGCTTGCATAAGACAAAAGGGGTGTGGAGGAAGCCCAGCCTCAGGCAGGGAAGGCACTAAATCTTCTCAATAAGAGAGATAGCACAAGAGAGAACCTGGAGATCTCGACTTCGAAGTCTTCAAACACAACTTCCCTTGCTCCTCACACATCATCCGAAACACAAACCGTCCGTTCAGTTCAGCCTTGCAGCACtttggagataaaaaaaaaataacacaacgcCATGCAAATATACTTAAAAGGATTAGGAATGAACGTTTAAGAAAATGACTTGGCTGTGTGAATCTGAATAAACGGgcatttcagtcatcataaagCAGACAGCGCCAACAGAGGGCACTGTTCCACAACAAATCAGACGTCAAACATTTAGTGCAATGGATACCTTCATCTGTTTTAGCTTTTAGTCCTCGGGTTTTAAAGATGATGTCAAGTACGGTGGCCAAATTCATTCCCCTCCAAAGCGATAAAATCGGACGTCAAACAGCATGCCAGTTTGATTTCTACAGGACAGACTAAAAATTCATTCACTTAAGCTTCTCATCTGGGAGCTCAAATGCATTTCCAATTCGTTCTTCCAAGTCAAGCAACCCACAAATCGGACTAAACCCAAGTGACCACAAATATCATTTGTGATAGAAATGTATTAATTATGAGGTCAGCAAATATGAAATAATACCTTAAACCGTGTGCGGCAATCAGAACCCACCCTCGAAAGGTGAAATAAATGACTTCTTAGCAGTTCAAAATGGCCTGAGTATAGCAGAGGCGAAGGCGATCTAAGGAGTTTTCCGAACCCCCCTCCCCCTTAAGATTAAGGCATGGCTGGGTCTACATGGGACTTGATCGCTGGGATCGGCATTGACGTCAAGAAATAATGTTCTCCGCTGGCAGGAAAACCTCTGAGTAGCAGCAGTAGGCCTAAATATCCATCTGTCGATTTTGGGTCATGGTTACGCAGCGAGTGGGATTCGCTGAAACGACATGACAGACCTCAGATCTCCTCATTTCGGCTGCCTCGAAGGGAAGCGCCGATGCCAATTACTCAACGCTTGAGTTGCATGTAACAGTCACCTGGAaaaatctgaactcacgtgcgaccaAAAAGAGAAAATCAAATAAACGTGAAATGTCATTCCAAGAGGTCTCCGCTTGTCAGACCACAGGTGGCCTGATTCAAAGTGGCATAGGTACAGAGTGATGCACCCACTGCTCGGAAATACTGAGTTACGAACTCCCAACACTGACAAATTAAACGACTGCACTTCCGACAAGAGCTTCTGACACATCAAGAGAAGCTACTAGTAAAGCAACTCTCGTGACAGGTGGATTGAATTGTTATTGTCATTGTCATGTTGACATGAAGCCTGGAGGATCGGCTAAAGATGAAAGGAAACTCGCGAGTGAGTCACCTGCTCTGAGAAACACATCCAGGGTAAACATCGATGCGTTCTGCATAAAAGTGGTTAATAGAATCAGTTCGCTCAGCCTCCTTTTGCTGCAGAATGAGGTCAGGGAAGGTAGGCTTTAAGTAGGCTGCGTTGCATTGCTTTTTAAGAGAACTGAAATCTTGTGAAAGTCATGTTTTATCAAGATCTTATTTCAATGGAAAGATTTAAAGGAGCACTCCAATTCCCTTGAAAACAAGCTAATTTTACAAGTCACAGAGTTGAACAGTTGAGTCTGACCATTTTTGTATACGTTCAGCTGATCTCTGAGACTGCTGGGAGCACTTTTACCTTAGTTTTTTATAATCCTTGATTAGATTAGACCATTGGCATCTTACTactcctatttaaagcttgactattctGCAGTTACACTGCGTATGAAGACTGATGGAAAAGCTAAGtaactatactctcattttggAGTAATAATCAAGGAAGTTTGCTGCTGTACCATAGCTGCAGCAGGTGTATTGATGTTACACAGCATCCGAAAATAGTCTCGGGCTAGGTAACCAGGCAATAGCGCTGCGTTATTTCATTGTGCCTGCTTCAGCCATGGtccagcagcaaagttccttgattgacttttaatttcagtcaataTTAGtatacaatgtaactacagaaaagtcaagctttaaataggagagctactatttttttttttttaatgagcgagatgctaatgcttcagtttatgctaagctaaggtaaaagtgctcctgctagaccTGGAAAGCAGCTGAATAaactcaaaaatggtaaaactcaattgtTCAACTCTACAGTACTTGTAAAAAGTGAAAGTGTAGTGTTTAAGAAATAGAGACTGAATCTTCATGTATCTGAACAGTGGTAAAGAGAACTGCAAAACGACGTCCTTGACATTCAGAGGACAAGACAAGCAGGCCTCCTACCAAGCTCAGTCCGACTTCCGCTCTCTAAGGAGATTGCTTGCATCCCAGCCAGGGTCTATGCTAGATCTATTTTTGGACCTGACCCTCTGAAACTTTGCGGGACGGCAAACTGGAGCTCACCCACTCAGGGTTCACAACTCTTTCAGGCTTGACTCAGAGGTGGGCTGCAGTAGGAGTCCAGGAGGACCAGTGAGTTTCACTGCAACTGCATCAGGCAGCTTATATTACCCAACACCAGCCAAGGGTGGATGGAGGATTACACATTTACGACCACCTGCAGATTAGGAGTGCCATCTTGCATAATAATTTACTCTCTTTCTGCACTAAAATCTTGTCTATGCTCTCGTTTTGAATGCAATAAATCAGCATGTCTACGCAAAGGAGGAGAGAAACCTCAGAAAAcctGTTCATGACATCATAATTGTCGGTCTACTACTGACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036597 True 3244 lncRNA 0.41 2 27108706 27113992

Neighbor

gene id symbol gene type direction distance location
XLOC_017361 ubr7 coding upstream 997 27093042 ~ 27107709 (+)
XLOC_017360 tmem251 coding upstream 17853 27087539 ~ 27090853 (+)
XLOC_017359 chga coding upstream 62715 27020201 ~ 27045991 (+)
XLOC_017358 si:dkey-177p2.18 coding upstream 95747 27003558 ~ 27012959 (+)
XLOC_017357 sel1l coding upstream 105408 26987416 ~ 27003298 (+)
XLOC_017363 NA coding downstream 80860 27194852 ~ 27198481 (+)
XLOC_017364 si:dkey-85n7.6 coding downstream 126396 27240388 ~ 27283820 (+)
XLOC_017365 NA coding downstream 183152 27297144 ~ 27372450 (+)
XLOC_017366 BX255913.3 coding downstream 224014 27338006 ~ 27338121 (+)
XLOC_017367 tmem179aa coding downstream 279676 27393668 ~ 27396568 (+)
XLOC_017351 BX248515.1 non-coding upstream 206438 26899745 ~ 26902268 (+)
XLOC_017348 NA non-coding upstream 402677 26704384 ~ 26706029 (+)
XLOC_017344 BX537272.1 non-coding upstream 513827 26594764 ~ 26594879 (+)
XLOC_017340 NA non-coding upstream 749272 26095530 ~ 26359434 (+)
XLOC_017339 AL954831.1 non-coding upstream 1042762 26059710 ~ 26065944 (+)
XLOC_017368 dre-mir-203b non-coding downstream 291886 27405878 ~ 27405962 (+)
XLOC_017369 BX255913.2 non-coding downstream 302528 27416520 ~ 27417816 (+)

Expression


Co-expression Network