XLOC_017556 (serinc1)


Basic Information

Item Value
gene id XLOC_017556
gene name serinc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 40457599 ~ 40472519 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034881
GCTTCATCAGACAGCGGAGCTGCATTGTAAACACACCGCGTCCATTTTCAAACCCGTCCGGAAAAATATTGCACATCACCGACGAATATGGGGGCCGTACTTGGGCTTTGTTCCATGGCCAGTTGGATCCCTTGCCTTTGTGGCAGTGCTCCTTGCCTGCTGTGCGGATGCTGCCCGAGTGGAAACAACTCCACTGTCACTCGGCTGATCTATGCCTTTTTCATGCTGCTTGGCGTGGGCATCGCCTGTATTATGCTCATGCCGGGCATGGAGGGGCAATTGAAGAAGATTCCAGGCTTTTGTGAAGGAGGAATGGGTTCATCCATTCCAGGAGTGGAAGGTCATGTTAACTGTGATGTGCTGGTGGGCTATAAAGCTGTTTATCGTGTGTGCTTTGGGATGGCCATGTTCTTCCTGCTCTTCTCTCTCATTATGGTCAAGGTCAAGAGCAGCCAGGACCCGAGAGCTGCTGTGCATAACGGGTTTTGGTTCTTCAAGTTTGCTGCAGCCACTGCTATTACAGTCGGAGCATTCTTCATTCCTGAGGGCCCTTTTACCACTGTCTGGTTTTACATTGGGATGGCTGGAGCATTTTGCTTCATCCTCATTCAGCTTGTGCTTCTGATTGACTTTGCCCACTCTTGGAATGAGTCCTGGGTGGAGAAAATGGAGGAGGGAAACTCTCGCTGCTGGTATGCAGCTCTTCTATCTGCCACAGCCATCAACTACGCTCTGTCCCTGATGTCTCTGGTCTTGTTCTATGTTTATTATACTCACTCTGACGGGTGCACTGAGAATAAAGTCTTCATCAGCATCAACATGCTGCTGTGCGTTGGTGCATCTGTCATGTCCATCCTGCCTAAAATCCAGGAATCCCAGCCCAGGTCTGGTCTCTTGCAGTCCTCCATTGTTACTCTTTACACCATGTATCTGACCTGGTCTGCCATGACTAATGAACCTGACCGCAGATGCAACCCTAGCTTGCTTGGCATTATTGGTCTCAACAGCACCAGCCCTGCCGGTCAGGACCGTGTTGTTCAGTGGTGGGATGCCCAGGGCATTGTGGGTTTGATCTTGTTCCTGATGTGTGTGCTGTACTCCAGCATCCGCAACTCCAGTAATACTCAGGTGAACAAACTGACCCTGACCAGCGATGAATCTGCTCTGATCGAGGACGGTCCTGCCCCTGAGAACTTTGAAGTGGGCGATGGTACCAACCGTGCCATTGATAATGAGAAGGATGGCGTCACTTACAGCTATTCTTTCTTCCACTTCATGCTCTTCTTGGCTTCCCTATACATCATGATGACACTGACCAACTGGTACAGCCCTGACTCCAACTATGAGACGATGACGAGCAAGTGGCCGTCTGTGTGGGTGAAGATCAGCTCCAGCTGGATCTGCATCTCTCTGTACGTGTGGACTCTGGTGGCTCCGCTGGTCCTCACCAACCGCGACTTTGACTGAGAGAATCCGCCGTTACTTCTGTCAATATCCACATGTATAGGGATAAGAGagtgtaaatgtaaatagtgttttgCGCATTCGGCTAACCCCATgtgtattttctgtattttaaatcTTGCATGCTTTTACGGTTGGTGTTTATTAGTTGAAAGCTGAACTAAGTGAAGAACACGGCTTGGGTTTCCTTTGATGTGATGTTAATATTTCCTTCATCAACTTGTGTtcttcctcaaaaaaaaaaaaaaaaaaaaaaaattatgaaacatTGATTATTAATCTTTCTGTGCTTAAAAAAAGTATCTTAATTTATTCGTGAGAAGTAAACATGACAAAGCAGGTCATGTTTTCCATAAGTCACACCATTGATCGTTTCCTATAGAACGCACAATGTATTCAGTGTTGCTTTAGCATGTGAAAAACTGACAAAGTTGTAGATTTTGTCCTTCTTAATGATTTACACCATAAACATATGACTGTAACAGTGCTTAATAATCCTTTTGCAACTTGCACATGTTAGTTGTTTGGCACACTTCATTTAATGCTTGtagccaatgtgtgtgtgtgttgaacaatGTTTTGCACTGGATATATTATTCTTCGCTGATAAAACCTAAATAGCTGACTTGTTTTGCTTTACCTTTTATTGTATATTGTATTAGGCACGCCAGTGATTTACTAGATGGCTGTACCAAATGTTTCTTTTCCTTCATTTTTGGATGTCAGtgttattttttctcttttgatGTGCATTGTAATCACTCAACATTGCAACTtattaaaggtttaaaaaaatagaTGTCTTGAGCAAagtttgtaaataatattgaTGCAGATTTCACATATTTCATTTTTTCTGATTCACATGTTTAAAAGGTGCctagaatgaaaatctggatatacctcA
>TCONS_00034882
GAAAAATATTGCACATCACCGACGAATATGGGGGCCGTACTTGGGCTTTGTTCCATGGCCAGTTGGATCCCTTGCCTTTGTGGCAGTGCTCCTTGCCTGCTGTGCGGATGCTGCCCGAGTGGAAACAACTCCACTGTCACTCGGCTGATCTATGCCTTTTTCATGCTGCTTGGCGTGGGCATCGCCTGTATTATGCTCATGCCGGGCATGGAGGGGCAATTGAAGAAGATTCCAGGCTTTTGTGAAGGAGGAATGGGTTCATCCATTCCAGGAGTGGAAGGTCATGTTAACTGTGATGTGCTGGTGGGCTATAAAGCTGTTTATCGTGTGTGCTTTGGGATGGCCATGTTCTTCCTGCTCTTCTCTCTCATTATGGTCAAGGTCAAGAGCAGCCAGGACCCGAGAGCTGCTGTGCATAACGGGTGAGTGTGTGACTAAATTTAACTTTTCCAAAAATCTATCATTAGCACTGTATGTTATCATTAGTCTGTATGATTACCAAAataactagggctgcatgatattaatGAAGATAATAGCTCTGTTTGGAAAGGATTCATTATTCTAGAACGGAGGTGCCCAAAGTAGGATCTGTTGGCCCATGttaatctttgatttggcccaccatttcatctgaaaagagagggagaatgatggggagttgGTTGGGGTGAATGCATGTGACAGAGTTCGCCATTTCAAGTTTAACAtaaccttttgtttctttgttt
>TCONS_00034883
atgaactatccctttaaggtgaaATATGGTGACCCATAAACCAAAATAACAAATGAATGCAACATATGTGATATAGTTTGACATAAAAAGTGGGATTTATAAAGCCAGCTTAAGCAATGAAAGATTAAAGATTAGGCAGACTTGactttattttgcttttgttttgtgagAATCTATTGATGATCTTCTGCTGGATCTTTTCCAGTCTGGTTTTACATTGGGATGGCTGGAGCATTTTGCTTCATCCTCATTCAGCTTGTGCTTCTGATTGACTTTGCCCACTCTTGGAATGAGTCCTGGGTGGAGAAAATGGAGGAGGGAAACTCTCGCTGCTGGTATGCAGCTCTTCTATCTGCCACAGCCATCAACTACGCTCTGTCCCTGATGTCTCTGGTCTTGTTCTATGTTTATTATACTCACTCTGACGGGTGCACTGAGAATAAAGTCTTCATCAGCATCAACATGCTGCTGTGCGTTGGTGCATCTGTCATGTCCATCCTGCCTAAAATCCAGGAATCCCAGCCCAGGTCTGGTCTCTTGCAGTCCTCCATTGTTACTCTTTACACCATGTATCTGACCTGGTCTGCCATGACTAATGAACCTG

Function

symbol description
serinc1 Predicted to act upstream of or within phosphatidylserine metabolic process and sphingolipid metabolic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in female organism and nervous system. Orthologous to human SERINC1 (serine incorporator 1).

GO:

id name namespace
GO:0006658 phosphatidylserine metabolic process biological_process
GO:0006665 sphingolipid metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4415 Predicted to act upstream of or within phosphatidylserine metabolic process and sphingolipid metabolic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in female organism and nervous system. Orthologous to human SERINC1 (serine incorporator 1).

Ensembl:

ensembl_id ENSDARG00000009106

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034881 False 2371 mRNA 0.44 10 40457599 40472519
TCONS_00034882 False 731 lncRNA 0.46 3 40457659 40462238
TCONS_00034883 True 604 lncRNA 0.43 3 40464744 40466906

Neighbor

gene id symbol gene type direction distance location
XLOC_017555 si:ch211-199i15.5 coding upstream 203917 40237441 ~ 40253682 (+)
XLOC_017554 trdn coding upstream 226220 40150612 ~ 40231379 (+)
XLOC_017553 CR847530.2 coding upstream 536493 39920443 ~ 39921106 (+)
XLOC_017552 NA coding upstream 575239 39848711 ~ 39882360 (+)
XLOC_017551 hddc2 coding upstream 767808 39685572 ~ 39689791 (+)
XLOC_017557 NA coding downstream 15485 40488004 ~ 40518327 (+)
XLOC_017558 cx28.1 coding downstream 267445 40739964 ~ 40774857 (+)
XLOC_017559 tbc1d32 coding downstream 294126 40766645 ~ 40840993 (+)
XLOC_017560 NA coding downstream 397376 40869895 ~ 40888021 (+)
XLOC_017561 NA coding downstream 454612 40927131 ~ 40944911 (+)
XLOC_017544 AL845306.1 non-coding upstream 1125507 39331969 ~ 39332092 (+)
XLOC_017541 NA non-coding upstream 1262482 39048059 ~ 39195117 (+)
XLOC_017538 BX511178.1 non-coding upstream 1682512 38774972 ~ 38775087 (+)
XLOC_017563 NA non-coding downstream 775940 41248459 ~ 41473366 (+)
XLOC_017566 NA non-coding downstream 1386758 41859277 ~ 41963921 (+)

Expression


Co-expression Network