Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00034883 |
| length | 604 |
| lncRNA type | retained_intron |
| GC content | 0.43 |
| exon number | 3 |
| gene id | XLOC_017556 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 40457599 ~ 40472519 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006658 | phosphatidylserine metabolic process | biological_process |
| GO:0006665 | sphingolipid metabolic process | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-030131-4415 | Predicted to act upstream of or within phosphatidylserine metabolic process and sphingolipid metabolic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in female organism and nervous system. Orthologous to human SERINC1 (serine incorporator 1). |
| ensembl_id | ENSDART00000153334 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00034882 | lncRNA | upstream | 2506 | 40457659 ~ 40462238 (+) | False | XLOC_017556 |
| TCONS_00036648 | lncRNA | upstream | 216598 | 40240162 ~ 40248146 (+) | True | XLOC_017555 |
| TCONS_00034879 | lncRNA | upstream | 262071 | 40173379 ~ 40202673 (+) | True | XLOC_017554 |
| TCONS_00034874 | lncRNA | upstream | 543638 | 39920443 ~ 39921106 (+) | True | XLOC_017553 |
| TCONS_00036407 | lncRNA | upstream | 582384 | 39848711 ~ 39882360 (+) | True | XLOC_017552 |
| TCONS_00036649 | lncRNA | downstream | 21098 | 40488004 ~ 40493581 (+) | False | XLOC_017557 |
| TCONS_00034884 | lncRNA | downstream | 21870 | 40488776 ~ 40518327 (+) | True | XLOC_017557 |
| TCONS_00036650 | lncRNA | downstream | 402989 | 40869895 ~ 40888021 (+) | True | XLOC_017560 |
| TCONS_00036651 | lncRNA | downstream | 460225 | 40927131 ~ 40944911 (+) | True | XLOC_017561 |
| TCONS_00036652 | lncRNA | downstream | 781553 | 41248459 ~ 41253693 (+) | False | XLOC_017563 |
| TCONS_00034880 | mRNA | upstream | 211062 | 40237441 ~ 40253682 (+) | False | XLOC_017555 |
| TCONS_00034877 | mRNA | upstream | 233365 | 40150646 ~ 40231379 (+) | False | XLOC_017554 |
| TCONS_00034878 | mRNA | upstream | 256725 | 40150677 ~ 40208019 (+) | False | XLOC_017554 |
| TCONS_00034876 | mRNA | upstream | 285785 | 40150646 ~ 40178959 (+) | False | XLOC_017554 |
| TCONS_00034875 | mRNA | upstream | 300336 | 40150612 ~ 40164408 (+) | False | XLOC_017554 |
| TCONS_00034885 | mRNA | downstream | 273058 | 40739964 ~ 40740707 (+) | False | XLOC_017558 |
| TCONS_00034886 | mRNA | downstream | 273058 | 40739964 ~ 40774857 (+) | True | XLOC_017558 |
| TCONS_00034887 | mRNA | downstream | 299739 | 40766645 ~ 40840993 (+) | False | XLOC_017559 |
| TCONS_00034888 | mRNA | downstream | 302359 | 40769265 ~ 40840865 (+) | True | XLOC_017559 |
| TCONS_00034889 | mRNA | downstream | 554148 | 41021054 ~ 41242638 (+) | True | XLOC_017562 |
| TCONS_00034862 | other | upstream | 1132652 | 39331969 ~ 39332092 (+) | True | XLOC_017544 |
| TCONS_00034855 | other | upstream | 1418564 | 38910241 ~ 39046180 (+) | True | XLOC_017540 |
| TCONS_00034852 | other | upstream | 1689657 | 38774972 ~ 38775087 (+) | True | XLOC_017538 |
| TCONS_00034845 | other | upstream | 1815854 | 38620666 ~ 38648890 (+) | False | XLOC_017535 |
| TCONS_00034905 | other | downstream | 2166079 | 42632985 ~ 42633105 (+) | True | XLOC_017575 |
| TCONS_00034912 | other | downstream | 2539398 | 43006304 ~ 43009613 (+) | True | XLOC_017581 |
| TCONS_00034930 | other | downstream | 3672839 | 44139745 ~ 44139861 (+) | True | XLOC_017600 |
| TCONS_00034931 | other | downstream | 3731792 | 44198698 ~ 44198815 (+) | True | XLOC_017601 |
| TCONS_00034940 | other | downstream | 4468133 | 44935039 ~ 44935155 (+) | True | XLOC_017608 |
