XLOC_017581 (si:ch211-203k16.3)


Basic Information

Item Value
gene id XLOC_017581
gene name si:ch211-203k16.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 42978499 ~ 43013017 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034911
TGTGTGTTTTCATGCTGTTTCAGACACTGTGAACTAATGCTGGAAGTTAATACAAGACACTGCAGGATTACCAGGACAAGATTCCCATCCTGCAACACATCGGGGtgtagaaagaaagagagagtgagagagaatgGCAGCAAACGTCTGCATTTCCCCAGAAGACAAACAAGACGCCTGAAACAGGTGACCTGTCCCGTATTCCTGCGTGTCCTGCTCTTCCCCAGGCCTGAGACTGGAGGTCCGAGAGCTGGTGCCCTGGCCTTCTCCCCCAGGGAAGAGGAGTCAGCCGAGCCGACCACATGGAGGACAGGCCTCAATCTGCACTCTTGCTGACTGTCCTGTTCCTGCTGACCCACGCCAGCGATGACCAGCACTCTCTGCACACGCATCAGGTCAGCACGGCTCAGTGTGGAGAATACAGCAATCAGGTGCTGGAGGACGGCATGTGCCGGCTGATGGCCACTCTGCCGCAGCTGGACGAGCAGCGCTGCCCTGACATGTTTCGCTGTACAGATGAGGTGTCATACTGGCTTCATGAGAACGAAGAGCGCAAACAGCAGATCCTAGCACTCAAGGAGACCGTTTCTGAATTGCAGGAGGAGCTGCGCAACCATCGACATCGAGTCAAAGTCTTAGAGCTGCAGAGTGAAGAGAAGAACCATAACAGTTCATCTATTGAGCAGAGATTGCATGAGCTGGAAAATCATTACGCTGAGGCTTCGACCCTCTTGCATATCCAGGGCTCCTtgatctatgacctccaggccCAGATCCATAACCTATCCATGCTGGTGGAGAAAGTCAGACGTAACCCCGGCTGTATGATCAACATCGTGCGCACCAGCCCGCTCATCAACGCACAGGAGGCCCTGCATCCCGAGGTGCAGAATGTTAGGAACTGTCCCATCGACTGTGCCTCCATCTACTATAATGGCGTTCGTCGCTCTGGCATCTACACCGTGGTGCCCTCACTAGGGGCTATGCCTGTGGAAGTCTACTGTGATATGGACACAGACGGTGGAGGCTGGACAGTGATCCAGCGAAGGCAAGACGGCTCTGTGAACTTTGACCGCAGCTGGAAGGAGTATAAAGAGGGATTTGGAGACCTGCACACCGAATACTGGCTGGGAAATGAGCACATCCACGATCTGACCAGTCAGGGAGATTACATGCTGCGCATCGACCTGGAGGACTGGagcaacaaacacaaacacgctCTCTATCAGAGTTTCAGtgtggaggATGAGAACACTCAGTACCGTCTGCATGTGTCGGGCTTCAGCGGGACGGTGGAGGATTCTTTCAGCTGGTATCATGACAAGCAGGGCTTCAGCACACCCGACACAGGCAACATCTGTGCCGAGATCTCCCACGCCGGCTGGTGGTACAACCAGTGCTTCTACACCAATCTCAATGGCATCTACTACAAGGGCGGCCGCTACTCTCTGAAGGGGAAGAACTCTCTGGGGCCGGACGGGGTCGTGTGGTTCACCTGGAAGGACTCGGATTATTACTCTCTGAGGAGAGTCAGCATGATGATCCGACCCAAAAGCTTCCGTCAGCATCTGTCACCCTGAATCAGCCTATGAGAAGCACCAGCAAGCCGGCCAATTGCAGTTCACTTCCAGGAGGAGGGCAGAGATTGTTCTGGATTGACTATTCTTCAGAAGGAAGTTTTGGTTGTAAGGTTTGAATGAGTTCTAGCAGGCGTTTTGGAAGGTTTTTGACTAAATATGCTGCTGAGATGGTTAAAAACTGATCTTTGCCATTCATTACATGCCTATATTTTCTATACCCATGGCTTTGGTTTTATAAAAGTATGTTTGAAGTAGGTTTAGTTTCTGTAGGGTacaaggatttaaaaaaaaaaaaaagctctagcAACAGCACATGTTTCTTAAGATGGGGTTATTTCACTGATtgcattattaatatattaaacacaTGTGTGCATTTAATCAAGTATATGCTAGAGTTCAAAAATGTGGAACTATATactctatatatttttaagtaggTCTCATATGCTTACCaggggcacggtggctcagtgtttagcactgttacctcacgg
>TCONS_00034912
AGAGGGATTTGGAGACCTGCACACCGAATACTGGCTGGGAAATGAGCACATCCACGATCTGACCAGTCAGGGAGATTACATGCTGCGCATCGACCTGGAGGACTGGagcaacaaacacaaacacgctCTCTATCAGAGTTTCAGtgtggaggATGAGAACACTCAGTACCGTCTGCATGTGTCGGGCTTCAGCGGGACGGTGGAGGATTCTTTCAGCTGGTATCATGACAAGCAGGGCTTCAGCACACCCGACACAGGCAACATCTGTGCCGAGATCTCCCACGCCGGCTGGTGGTACAACCAGTGCTTCTACACCAATCTCAATGGCATCTACTACAAGGTGGGATCAGACCTGCTGGCTCTTACTGTACACGCACAATAGCACTGCACCCTATCGTGATGAACTTAATCAAGGCTTTTAACCACAAGTTTctctttaacccttgtgtgctgttattTCCATCTTaaatgagtcttaatttggccataacttttttttgtgtttcagcCAGCAGAATAacttttggtgaca

Function

symbol description
si:ch211-203k16.3 Predicted to enable signaling receptor binding activity. Predicted to be involved in cell adhesion. Predicted to be active in collagen-containing extracellular matrix and extracellular space.

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-290 Predicted to enable signaling receptor binding activity. Predicted to be involved in cell adhesion. Predicted to be active in collagen-containing extracellular matrix and extracellular space.

Ensembl:

ensembl_id ENSDARG00000069305

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034911 False 2077 mRNA 0.50 8 42978499 43013017
TCONS_00034912 True 532 processed_transcript 0.48 2 43006304 43009613

Neighbor

gene id symbol gene type direction distance location
XLOC_017580 NA coding upstream 18720 42890873 ~ 42959779 (+)
XLOC_017579 pimr110 coding upstream 92679 42881104 ~ 42885820 (+)
XLOC_017578 pimr213 coding upstream 194244 42780162 ~ 42784255 (+)
XLOC_017577 pimr113 coding upstream 210914 42761881 ~ 42767585 (+)
XLOC_017576 slc22a2 coding upstream 290012 42668875 ~ 42688487 (+)
XLOC_017582 NA coding downstream 67038 43080055 ~ 43081035 (+)
XLOC_017583 moxd1l coding downstream 70728 43083745 ~ 43106423 (+)
XLOC_017584 dusp23a coding downstream 100448 43113465 ~ 43118411 (+)
XLOC_017585 NA coding downstream 183626 43196643 ~ 43196852 (+)
XLOC_017586 unc93a coding downstream 366012 43379029 ~ 43389475 (+)
XLOC_017575 AL929119.1 non-coding upstream 345394 42632985 ~ 42633105 (+)
XLOC_017572 NA non-coding upstream 485662 42381047 ~ 42492837 (+)
XLOC_017571 NA non-coding upstream 678243 42296266 ~ 42300256 (+)
XLOC_017569 NA non-coding upstream 754602 42220734 ~ 42223897 (+)
XLOC_017588 NA non-coding downstream 402784 43415801 ~ 43422764 (+)
XLOC_017589 AL928920.4 non-coding downstream 410985 43424002 ~ 43429323 (+)
XLOC_017590 NA non-coding downstream 418720 43431737 ~ 43434597 (+)

Expression


Co-expression Network