XLOC_017576 (slc22a2)


Basic Information

Item Value
gene id XLOC_017576
gene name slc22a2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 42668875 ~ 42688487 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034906
ACCTTTTTCTGTTTGTGGCATTCGGCAAAAACATGACCACTTTCGAAGAGATTCTGGAAGAGGCCGGCACATTCGGTCGCAGCCAAATACGCATATTTTGCACTTTCTGTCTGGTCTCCATACCGTTTTCTTTCGTCTATGTGGGGATTGTGTTTCAGGGATTTACTCCTGagcattggtgccgtgacccagctGTCAGTGAGATTCGGGAAAGATGCGGATGGAGTCTTCAGGACGCGCGCAGGGCGACCGTACCCTTGATAAACGGATCTTCAGGAGCGTCCTACAGTCAGTGTGGGAGATTTGACGTGGATTGGAACGCAACCGGACTGAGCTGCGAAAATCCAGATGGGGATTTTAACCAGTCCCAGCTCTCTGTAATGCCCATGATGAGTTGTGTGGACGGTTGGGAGTATGACTATGTAGGGAGGCAGTCGTTTGTCACTGAGTTTGATCTGGTCTGTGGAGACGCCTGGTATGTTGACATGTTCCAGGCCACACTCAGTATTGGCTTCCTTGTGGGCAGCATTGCAATCGGATATCTGGCAGACAAATATGGGAGGATGAAGAGTTTCCTGATGACCAACTTCTTCATTGGAGTCACAGGGATTCTGGTGGCCACGTCTCCTAATTACATCTCCCTGCTGGTGTTCAGAGCTCTCTTTGGCTTTGGGGTGAAGGGCGGTTGGATGGTTGGATATGTGCTaaTCACAGAGCTGGTTGGTGTTGACCACAGGAGGACGGTTGGTGTGACCTATCAGTTGTTTTTCAGCATGGGGATTCTCCTTCTTCCTCTCCTGGCCTACTTCATAACAAACTGGCGCTGGTTACAGGTGGTCTTCACAGTACCGTACATCTGCTTCCTGACTTACTATTGGTTCATCCCCGAATCACCACGATGGCTCCTTACCCAAAACAAGATAGCTGAAGCCGTGGAGATCACCAAATCAATAGCCAAAGAAAACAGGAAGACGCTGTCCAAGAAAATCGAGACACTGAAGGATGACAACATAGACTCTGGCTCAACTGCGTCTTTCATGGACCTGTTCAAGACTGCCAAACTGAGAACATACACGTTCATCCTCAGTTTCAACTGGTTCACCAGTGCTGTGGTTTACCAGGGTCTCATTATGAGGCTGGGAATCCTAGGAGGAAATGTGTATGTGGATTTCCTCATATCTGGAATTGTGGAATTGCCTGCCGCTTTCCTCATCCTCCTCACTATTGAGCGGATCGGCCGACGACTTCCGTTTGCGACTGCGAATATTGTGGCTGGAGCGGCTTGCTTGATCACAGCATTCATCCCCGACAGTATGTTCTGGTTAAAGAGCGCTGTTGCTTGTGTTGGACGGCTGGGTATCACTATGGCTTTTGAAATGGTGGTGTTTGTGAATACCGAACTATATCCTACTGTTATCAGAAATCTAGGTGTTTCAGTCTGTTCTACTCTCTGTGATGTTGGAGGGATTGTGGCACCGTTCCTGCTCTACAGACTCGCTGTTATTTGGCTAGAACTTCCTCTTATCATTTTTGGTGCTCTTGCTTTTGTGGCTGGCGGACTGGTTCTGCTGTTACCTGAAACCAAAGGTGTGCCTCTTCCAGAAACCATCGACGACATTGAACATCCAAACAGAAACAAAGAAAACCCTCAGCAGAGTCAACAGCTAGAGAATCTGATGACTTCTGATGTGACCAAAAACAAAGACGTTACAGCGGTTTGAGAGCGGATACAGCAACCCTTcgtaactttattattattatttgtatgtgGTGCTGCTTGTTTATTCTCACATGAAAATCAACCTGGCAAGAGAATAAATAAATTGGATTCTTTTTCATTGTCAGATTGTGAATTTGGTTTATGTATTTAATCagggacacggtggctcagtggttagcactgtcgattcacagcaagaaggttgctggtttgagtcctggctggaccagaaggcatttctatgtggagtttgcatgttctccccgtgtttctgtgggtttcctccaagtgcttcagtttctcccacagtccaaagacatgcgctactgGTGAATTGGCTTAACTAAATTCACCGTAGTGTTacaagtgtgtgaatgtgagagtgtatgggtgtttcccagaaatggtttgcagctggaagggcatcctctctgtaaaacatatgctggaatagttggtggtttattccactgtggtgaccctgatgaataagaaactaagccgatggaaaattaatgaatgaatgaatgaatgaatatttgatcAGACACAATCAACAGATCAAATGAATGGAGCGGTATTTGTCAGCACCTGTTTTTGTTTCCAAACTGATGAtctgttactgtatatttttagatatatattagttactgcagtggttctcaaactgtggtacgtctaccactagtggtacgcaggcttccttttagtggtacgcggaggaatgaaatatgtcatgctaaacacatttcaaaatttatcaaaaatgatgtagataatatgacatatagcctaaacttctgaggtaatctgccacatttttttactgtgcagagttgtagctgctttactgggcctactacgctactgtgtTTCAATACTGCTtgtttttggtggtacttggagagactattttttctgaggtggtacttgatgaaaaaagtttgagaaccactgagttactgtattttaatttcccattacttttattaaaaaaaaaaaactcccagtAAAATATCTTTGTGTTGTAAAGCACTGGTAAATATTCTTATTCTATCTCTTATTAGGGCTTGAATGTTGTGAACTGTTTGTATGGTGGAACACAAATAAAGAGACTTTCTCAAAAGAA

Function

symbol description
slc22a2 Enables transmembrane transporter activity. Acts upstream of or within determination of heart left/right asymmetry. Is integral component of plasma membrane. Is expressed in several structures, including eye; heart; liver; pleuroperitoneal region; and skeletal muscle. Human ortholog(s) of this gene implicated in acute kidney failure. Orthologous to several human genes including SLC22A2 (solute carrier family 22 member 2).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015695 organic cation transport biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0015101 organic cation transmembrane transporter activity molecular_function

KEGG:

id description
ko05231 Choline metabolism in cancer
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-040426-2167 Enables transmembrane transporter activity. Acts upstream of or within determination of heart left/right asymmetry. Is integral component of plasma membrane. Is expressed in several structures, including eye; heart; liver; pleuroperitoneal region; and skeletal muscle. Human ortholog(s) of this gene implicated in acute kidney failure. Orthologous to several human genes including SLC22A2 (solute carrier family 22 member 2).

Ensembl:

ensembl_id ENSDARG00000030530

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034906 True 2849 mRNA 0.44 11 42668875 42688487

Neighbor

gene id symbol gene type direction distance location
XLOC_017574 igf2r coding upstream 8219 42563618 ~ 42660656 (+)
XLOC_017575 AL929119.1 coding upstream 35770 42632985 ~ 42633105 (+)
XLOC_017573 si:dkeyp-93d12.1 coding upstream 107135 42537768 ~ 42561740 (+)
XLOC_017572 NA coding upstream 176038 42381047 ~ 42492837 (+)
XLOC_017571 NA coding upstream 368619 42296266 ~ 42300256 (+)
XLOC_017577 pimr113 coding downstream 73394 42761881 ~ 42767585 (+)
XLOC_017578 pimr213 coding downstream 91675 42780162 ~ 42784255 (+)
XLOC_017579 pimr110 coding downstream 192617 42881104 ~ 42885820 (+)
XLOC_017580 NA coding downstream 202386 42890873 ~ 42959779 (+)
XLOC_017581 si:ch211-203k16.3 coding downstream 290012 42978499 ~ 43013017 (+)
XLOC_017569 NA non-coding upstream 444978 42220734 ~ 42223897 (+)
XLOC_017568 NA non-coding upstream 465342 42203150 ~ 42203533 (+)
XLOC_017582 NA non-coding downstream 391568 43080055 ~ 43081035 (+)
XLOC_017585 NA non-coding downstream 508156 43196643 ~ 43196852 (+)
XLOC_017588 NA non-coding downstream 727314 43415801 ~ 43422764 (+)
XLOC_017589 AL928920.4 non-coding downstream 735515 43424002 ~ 43429323 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_03689026_03697933 SLC22A2 coding CI01000029 null 3689026 ~ 3698074 (+)