XLOC_017587 (pimr138)


Basic Information

Item Value
gene id XLOC_017587
gene name pimr138
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 43396318 ~ 43403699 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034918
ATTCGCAATTACTCTTACTTGACAAGTGTTTAGTTGAGTTGTACAAAGTTCGCTTTGAATAATTTGCTTTTCGTACATTGTCAACTGATAGCGTACGATTTATTAAGGCTTACTCTGACAAACGAGCTTTACTTAGTGAATTTCAGTATTTATTGTAGgtttatttaacatttctcaTATTTAAGTGTACGGAAATTAACCCAAAAATGTTATTTACCGTACTCGGAGTAATTGCTCTCTTCCTGAGAGAAAGATCCATCAATTCCACCGTCTCAGGTCAAGATGAAAGCTTCGACCGTCAAGGACTGGTCACGGTACCCCCCGTGGCCACCAGTGATGGTCAAGAAATCGGTGACTGGTGTGAAGAATTATCTTTTCATCTGGAGGAACAGATCAATGTTCAGACTGAGGAACCATCACTGGAGGAACCTGTTGATGGTCAGAGTAaagaaccatcactggtagagtctgacagtgttcacggtgaagatccatcactggtagagcctgacagtgttcacggtgaagaaccatcactggtagagcctgacagtgttcacggtgaagaaccatcactggtagagcctgacagtgttcacggtgaagaaccatcactggtagagcctgacagtgttcacggtgaagaacaATCACTGGTAGAGTCTGTCGATGGTCACAGTGAGGACTCGGCCAGCTCCTCCAGAAGTAGTGATAATGTTCCTCAAGAGATTTACTCAGCCGGATTCAACTGTAGTATTGAGCTCACAGCCAGCTCCTACAGCAGCTTCTTCTCTGCTGagtccggctgtggtgatgacgCCTCTACAGATTTTCTGTCCGCTGagtccggctgtggtgatgacgCCTCTACAGATTTTCTGTCCGCTGAGTCCGGCTGCGGTGATGACCCccctccaaatgtggtctctgcTGAGCCTGGCTGTAGTCATGACGAccctccaaatgtggtctctgcTGAGCCCGGCTGTAAAGATGACGTCGCTCAAGGGGCAACCTGTCAGACAAAGGGCGCTGTCCCACCTCAGCCAGAAGAGCAGAAGAACAAAGACACACACATCATTGAGATCAACTCAAAGTCTTATGAAATCGGGGCTGAGCTGGGCAAAGGAGGCTATGGAACCGTTTTCGCAGCGACCCGTTTACAAGATGGTCTTCAAGTGGCAGTAAAAATTGCAGATTTCAAGGACAGGCGATACATCCGTGTTGATGGGTTTGACAGACTACTTCCAGAGGAGATCGCTCTGCACTATCTTGCTACTAAAGGCCCCAAGGTTAAACAAATTGTTGATCTTCTGGACTGGAAGGTGGAAGCTGATTGCTACTTCATGGTCCTAGAGCGGCTCATACCCTGTGTGGACTTAAGTAATTTTTTAGAAGACCACAAAGGCATTGTTGCAGAGGACGTGTTACGGAAAATCATGTTCCAGGCAACAATTGCAGCTGACACATGCCTCAAACGTGGAGTGTTTCACCGCGATATCAAGCTGGAGAACTTGCTGATTAACCCAGAGACCTTAGAAGTCAAACTGACTGACTTCGGGTGCGGTGCCCTCTTTAATGAGAACGGTTACACAGAGTTTTGGGGCACACCACAGTACTGCCCTCCCGAGTTTAAAGGTGTTAACACATACGATGCTGAGCCAGCGACAGTGTGGACACTCGGGATTCTTCAGTATTTGCTAATATTCAACAATTTCCCAGAAAACCGTGACCTCTTCAGGTTGAATTCTGGACATGCAAAGCATGATGGATGGTCAAAAGAATGCAATGATTTCCTCTGCAGTTGTCTGGAAATTAACTACCCTTTTCGACCCAAGTTGCATGCACTCCTTGACCATGCCTGGTTTAAGGAGGAGAACAAGGAAGAGGATTAGAACTGAGGAGAAATGTCCTCATTTAATGGGTGGATCTAGCCATTTTAAACCCCACCACCATAGTCCTTTAGCTAAACATAACTTTATCCACAGAAAGCTGAACATAATTTGGTTCTGCAGTGTCATAGctcttattttaacatttacactGGCTCTAATTAAGCTTCCtgtaaagaaaacaacaacaaaaaagataaaGCACTTAACAGTTTAGACCTTCATATAGTGTACATAGCCCTTCCCACACTTTTATATCAGCTTTTGCTTCAACTTTTACACTTCCacatgctaaaataaaatgtataaaaaaattaaataaataaaaataaatatctcaGTCGTTCCCAGTCCAGGTCCACATATTTTGGGTGTCTCTCTCTAAAAAATGTCATTTGAGCCAGAGGAGAGAGACTCCTGACCAATGATCACTGGGATCAACtgatatatatacagggtttccAATGAACATTATCACTCACCAGTCAATTTGGCcacaaaactagaaaaaaaacttataaaataaaacaataagtaaaaaaaataataaaacaaaaaaaagcataaataaaataataaaacaataaaaaaactgcctatattgaaatataaatctATAACTGGCCATGTTATTGACCAATCAGAAATTCTTctagaaacaaaaaaattaaataaaacattaaaaaagtaagttatgttatttattactcatcctcatgttcaTCATcagaactatttttatttttatgttagagCTCCCTCATCCAGACTCAAAGTccacaaaaacagtaaaaacatcctcaaaacagatcaTACGCCTtcatataaaacaaacatttttattcacagtttcttctcctcagtgtgatTATAGGGCACGCGTTCACAAGCACTGTGCAGTGACATATACCCCACGGATGCCTGTGCGACTTCCTCTCTGACTTCCTCTCTTAAAAACTTCACAGGCACATCCAAGGTTATATGTCAGAGGCGCAACACATGAACgcgtgccctatactgacactgagggaagaaactgttgaataaagttaattttgttttatgtgtcgTTCCCAGTTCAAGTCCATATATTTTGAGTGTCTCTCTCTAAGAAATTTAATTTGAGCCAGAGGAGAGAGACTcctgataaaatataaaaattaattaataaataaaactataaaaagtaaaaaataaaaaaataaaacatcattaataaataaaactataaaaagtaaaaaaataaaataaaaacattaataataaataaaacaataaaaaagtaaaaaaaataataaacatcattaataaataaaactattaaaaaaactgcctatattgaaatataaatctATAACTGGCCATGTTATTGACCAATCAGaaattcatttagaaacaaaaaaattatttaataaaacattaaaaaagtaaaaaaataaaataaaaacataattaataaataaaactataaaaaaccTGCCTATCTTGAAATCTATAACTggttatattattatgttatgttattgaccaatcagaaattcttctagaaacaaaaaaattattaaataaaacattttaaaaagtaagttatgttatttattactcatcctcatgttcatcttcagaactattttaactatttttatttttatgttagagCTCCCTCATCCAGACTCAAAGTccacaaaaacagtaaaaaaacatcctcaaaacagatcaTACGGcttcacataaaacaaacatttttattcacagtttcttctcctcagtgtgatTATAGGGCACGCGTTCACAAGCACTGTGCAGTGACATATACCCCACGGATGCCTGTGCGACTTCCTCTCTGACTTCCTCTCTTAAAAACTTCACAGGCACATCCAAGGTTATATGTCAGAGGCGCAACACGTGAACgcgtgccctatactgacactgagggaagaaactgttgaataaagttatttttgttttatgtgcacataaAAGTATTCTCATAGTCAGGAATCTTGCTGTCTATGAGAGATtaaggagctctcagatttaactaaaatatcttcattattttcattcagatatcttcatttgtgttctgaagatgaataaagTTACTACCTTTAGTATTTGCTTTAATATTGTCCTCATATACAACCTTCTCTAGTCTAATGTTTTGCTAATGTGGTATATGATTTATGGTTGGAGGACATCATTTATTGACTAGTGATTTTGTGTGTAGTTGTAGTTCATGGTGAGTGATAATCCAAACCCTGTATATATAGGTGGCGATGTCCGTTCCTCCACGTGGTGCCACTGGAAACTGCCCATCTTAAAGGTGGTGCTGAGCTGAA
>TCONS_00036667
AGATCAACTCAAAGTCTTATGAAATCGGGGCTGAGCTGGGCAAAGGAGGCTATGGAACCGTTTTCGCAGCGACCCGTTTACAAGATGGTCTTCAAGTGGCAGTAAAAATTGCAGATTTCAAGGACAGGCGATACATCCGTGTTGATGGGTTTGACAGACTACTTCCAGAGGAGATCGCTCTGCACTATCTTGCTACTAAAGGCCCCAAGGTTAAACAAATTGTTGATCTTCTGGACTGGAAGGTGGAAGCTGATTGCTACTTCATGGTCCTAGAGCGGCTCATACCCTGTGTGGACTTAAGTAATTTTTTAGAAGACCACAAAGGCATTGTTGCAGAGGACGTGTTACGGAAAATCATGTTCCAGGCAACAATTGCAGCTGACACATGCCTCAAACGTGGAGTGTTTCACCGCGATATCAAGCTGGAGAACTTGCTGATTAACCCAGAGACCTTAGAAGTCAAACTGACTGACTTCGGGTGCGGTGCCCTCTTTAATGAGAACGGTTACACAGAGTTTTGGGGCACACCACAGTACTGCCCTCCCGAGTTTAAAGGTGTTAACACATACGATGCTGAGCCAGCGACAGTGTGGACACTCGGGATTCTTCAGTATTTGCTAATATTCAACAATTTCCCAGAAAACCGTGACCTCTTCAGGTT

Function

symbol description
pimr138 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-153 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000041550

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034918 False 4234 mRNA 0.38 7 43396318 43403699
TCONS_00036667 True 661 lncRNA 0.47 3 43399244 43400548

Neighbor

gene id symbol gene type direction distance location
XLOC_017586 unc93a coding upstream 6843 43379029 ~ 43389475 (+)
XLOC_017585 NA coding upstream 199466 43196643 ~ 43196852 (+)
XLOC_017584 dusp23a coding upstream 277907 43113465 ~ 43118411 (+)
XLOC_017583 moxd1l coding upstream 289895 43083745 ~ 43106423 (+)
XLOC_017582 NA coding upstream 315283 43080055 ~ 43081035 (+)
XLOC_017588 NA coding downstream 12102 43415801 ~ 43422764 (+)
XLOC_017589 AL928920.4 coding downstream 20303 43424002 ~ 43429323 (+)
XLOC_017590 NA coding downstream 28038 43431737 ~ 43434597 (+)
XLOC_017591 NA coding downstream 35438 43439137 ~ 43467982 (+)
XLOC_017592 NA coding downstream 145292 43548991 ~ 43555516 (+)
XLOC_017580 NA non-coding upstream 436539 42890873 ~ 42959779 (+)
XLOC_017575 AL929119.1 non-coding upstream 763213 42632985 ~ 42633105 (+)
XLOC_017572 NA non-coding upstream 903481 42381047 ~ 42492837 (+)

Expression


Co-expression Network