XLOC_017591


Basic Information

Item Value
gene id XLOC_017591
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 43439137 ~ 43467982 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036669
ttgcaGACTCAAGCGTATGGAGAACATTAGAAACTGGACACATATACCACATCCACAGCAGACATCTTCAGTGATTTTCATTGCTTGTATTTATTTTCAGAGGAAatgcagCTCAGCACAACCTTCAGGATGGGCAGTTCTCAGTGGCACCACCTGGAGGATCGGACCTCACGACCTTTATATACAGGCTCTCTTGGCTGAGCTGAAACACCGCTCTCTGTCTGACAGAATGCACCTTGAGAGCCATCATCTCTACATCCGGGCGCAGCAGAGACAACATTTGGAGGGGGGGTCATCACCACAGCCTCACTCAGAAGAAAAGAAGCTGCTGAAGGAGTTGGTTGTGAACTCACTACTACAGTTGGACCCGGCTGAGTAAAACTCATGAGGGAAGTCATCACTGCTGCTGGACTCAGAGTAGAAAATGTTTGGAGGAACATCATCACTGCTGGAGGAGCTGGCTGTGAGGTAACCACTATAGTTGGATCTGTATGTATACTTAGATTTCCGCTCCAGTATGTTAGTTAAGCAGGGCTTAAAGTATTCTGGCACCATGTCGGATCTCCGGCGTGTGGccgtgagagagaaaaaaaaatattttagagcttGCGCATGCGGTTTAAatggggatgctcaaaataaccgattaaccgttaaccgaaagggtgtgtTTGTAACCAAATAATGGTATCAGTTATACGATTAAAAATAtacttaatatgtttttaaa
>TCONS_00036670
tgcaGACTCAAGCGTATGGAGAACATTAGAAACTGGACACATATACCACATCCACAGCAGACATCTTCAGTGATTTTCATTGCTTGTATTTATTTTCAGAGGAAatgcagCTCAGCACAACCTTCAGGATGGGCAGTTCTCAGTGGCACCACCTGGAGGATCGGACCTCACGACCTTTATATACAGGCTCTCTTGGCTGAGCTGAAACACCGCTCTCTGTCTGACAGAATGCACCTTGAGAGCCATCATCTCTACATCCGGGCGCAGCAGAGACAACATTTGGAGGGGGGGTCATCACCACAGCCTCACTCAGAAGAAAAGAAGCTGCTGAAGGAGTTGGTTGTGAACTCACTACTACAGTTGGACCCGGCTGAGTAAAACTCATGAGGGAAGTCATCACTGCTGCTGGACTCAGAGTAGAAAATGTTTGGAGGAACATCATCACTGCTGGAGGAGCTGGCTGTGAGATGCAAAGGAAATAAACATGGAGAATGTGATGCAACTGAGAGAAGAACAAACCTACAATTACAACAGACTCAAGCGTATGGAGAACATTAGAAACTGGACACATATACCACATCCACAGCGGACATCTTCAGTGATTATCATCGCTTGTATTTATTTTCAGAGGAAatgcagtatcgtgcagccctccCAGAGACTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0030867 rough endoplasmic reticulum membrane cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005684 U2-type spliceosomal complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036669 False 730 lncRNA 0.45 3 43439137 43443696
TCONS_00036670 True 665 lncRNA 0.47 6 43439138 43467982

Neighbor

gene id symbol gene type direction distance location
XLOC_017590 NA coding upstream 4540 43431737 ~ 43434597 (+)
XLOC_017589 AL928920.4 coding upstream 9814 43424002 ~ 43429323 (+)
XLOC_017588 NA coding upstream 16373 43415801 ~ 43422764 (+)
XLOC_017587 pimr138 coding upstream 35438 43396318 ~ 43403699 (+)
XLOC_017586 unc93a coding upstream 49662 43379029 ~ 43389475 (+)
XLOC_017592 NA coding downstream 81009 43548991 ~ 43555516 (+)
XLOC_017593 NA coding downstream 120674 43588656 ~ 43589781 (+)
XLOC_017594 si:dkey-206f10.1 coding downstream 134828 43602810 ~ 43644531 (+)
XLOC_017595 parp1 coding downstream 180387 43648369 ~ 43689779 (+)
XLOC_017596 lin9 coding downstream 223226 43691208 ~ 43715242 (+)
XLOC_017585 NA non-coding upstream 242285 43196643 ~ 43196852 (+)
XLOC_017582 NA non-coding upstream 358102 43080055 ~ 43081035 (+)
XLOC_017598 NA non-coding downstream 506551 43974533 ~ 43995913 (+)
XLOC_017600 LO018405.2 non-coding downstream 671763 44139745 ~ 44139861 (+)
XLOC_017601 LO018405.1 non-coding downstream 730716 44198698 ~ 44198815 (+)

Expression


Co-expression Network