RNA id: TCONS_00036669


Basic Information

Item Value
RNA id TCONS_00036669
length 730
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id XLOC_017591
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 43439137 ~ 43467982 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttgcaGACTCAAGCGTATGGAGAACATTAGAAACTGGACACATATACCACATCCACAGCAGACATCTTCAGTGATTTTCATTGCTTGTATTTATTTTCAGAGGAAatgcagCTCAGCACAACCTTCAGGATGGGCAGTTCTCAGTGGCACCACCTGGAGGATCGGACCTCACGACCTTTATATACAGGCTCTCTTGGCTGAGCTGAAACACCGCTCTCTGTCTGACAGAATGCACCTTGAGAGCCATCATCTCTACATCCGGGCGCAGCAGAGACAACATTTGGAGGGGGGGTCATCACCACAGCCTCACTCAGAAGAAAAGAAGCTGCTGAAGGAGTTGGTTGTGAACTCACTACTACAGTTGGACCCGGCTGAGTAAAACTCATGAGGGAAGTCATCACTGCTGCTGGACTCAGAGTAGAAAATGTTTGGAGGAACATCATCACTGCTGGAGGAGCTGGCTGTGAGGTAACCACTATAGTTGGATCTGTATGTATACTTAGATTTCCGCTCCAGTATGTTAGTTAAGCAGGGCTTAAAGTATTCTGGCACCATGTCGGATCTCCGGCGTGTGGccgtgagagagaaaaaaaaatattttagagcttGCGCATGCGGTTTAAatggggatgctcaaaataaccgattaaccgttaaccgaaagggtgtgtTTGTAACCAAATAATGGTATCAGTTATACGATTAAAAATAtacttaatatgtttttaaa

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0030867 rough endoplasmic reticulum membrane cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005684 U2-type spliceosomal complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036668 lncRNA upstream 4540 43431737 ~ 43434597 (+) True XLOC_017590
TCONS_00034919 lncRNA upstream 9814 43424002 ~ 43429323 (+) True XLOC_017589
TCONS_00036412 lncRNA upstream 16373 43415801 ~ 43422764 (+) False XLOC_017588
TCONS_00036413 lncRNA upstream 16373 43416282 ~ 43422764 (+) True XLOC_017588
TCONS_00036667 lncRNA upstream 38589 43399244 ~ 43400548 (+) True XLOC_017587
TCONS_00036671 lncRNA downstream 105295 43548991 ~ 43555516 (+) True XLOC_017592
TCONS_00036672 lncRNA downstream 144960 43588656 ~ 43589781 (+) True XLOC_017593
TCONS_00036673 lncRNA downstream 193311 43637007 ~ 43644134 (+) True XLOC_017594
TCONS_00034926 lncRNA downstream 268314 43712010 ~ 43713530 (+) True XLOC_017596
TCONS_00036675 lncRNA downstream 530837 43974533 ~ 43995913 (+) False XLOC_017598
TCONS_00034918 mRNA upstream 35438 43396318 ~ 43403699 (+) False XLOC_017587
TCONS_00034916 mRNA upstream 49662 43379029 ~ 43389475 (+) False XLOC_017586
TCONS_00034917 mRNA upstream 49731 43379079 ~ 43389406 (+) True XLOC_017586
TCONS_00034915 mRNA upstream 320726 43113465 ~ 43118411 (+) True XLOC_017584
TCONS_00034914 mRNA upstream 342831 43083751 ~ 43096306 (+) True XLOC_017583
TCONS_00034920 mRNA downstream 159114 43602810 ~ 43644531 (+) False XLOC_017594
TCONS_00034921 mRNA downstream 179368 43623064 ~ 43625035 (+) False XLOC_017594
TCONS_00034922 mRNA downstream 204673 43648369 ~ 43689777 (+) False XLOC_017595
TCONS_00034923 mRNA downstream 204742 43648438 ~ 43689779 (+) True XLOC_017595
TCONS_00034924 mRNA downstream 247512 43691208 ~ 43714392 (+) False XLOC_017596
TCONS_00034912 other upstream 429524 43006304 ~ 43009613 (+) True XLOC_017581
TCONS_00034905 other upstream 806032 42632985 ~ 42633105 (+) True XLOC_017575
TCONS_00034862 other upstream 4107045 39331969 ~ 39332092 (+) True XLOC_017544
TCONS_00034855 other upstream 4392957 38910241 ~ 39046180 (+) True XLOC_017540
TCONS_00034852 other upstream 4664050 38774972 ~ 38775087 (+) True XLOC_017538
TCONS_00034930 other downstream 696049 44139745 ~ 44139861 (+) True XLOC_017600
TCONS_00034931 other downstream 755002 44198698 ~ 44198815 (+) True XLOC_017601
TCONS_00034940 other downstream 1491343 44935039 ~ 44935155 (+) True XLOC_017608
TCONS_00034947 other downstream 2595895 46039591 ~ 46041367 (+) False XLOC_017620
TCONS_00034979 other downstream 2998884 46442580 ~ 46494784 (+) False XLOC_017646

Expression Profile

//