RNA id: TCONS_00034922


Basic Information

Item Value
RNA id TCONS_00034922
length 3863
RNA type mRNA
GC content 0.46
exon number 23
gene id XLOC_017595
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 43648369 ~ 43689779 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCCTCATTGCGCTGTAACGTGAGTTGTCGGCCTGTCTGACTAGAATTAGTCTGCAAACTTCTCCTTTTAACAGAAATATCTGCAGAGATGGCCGACTCACAGGACGACAAGCTGTACAAAGCCGAATATGCAAAAAGCGGACGCGCCTCATGCAAGAAATGCAAAGACAACATTGCTAAGGACTCGCTGAGGATGGCCATCATGGTGCAGTCTCCCATGTTTGATGGCAAAGTCCCTCACTGGCACCATTTTTCTTGCTTTTGGCTCCGGGCCGCAGTTCAGTCTCCTTCTGATATATCTGGATTTACTGACCTCCGCTGGGATGACCAAGAGAAAGTGAAGACAGCCATTGAGAGTGGAGGTGCTACAGGAGGGAAAGGAGGACAGAAGGGAGCGGCTAAAGGAGAGAAGACGCTGAATGACTTTGCAGTGGAGTATGCTAAATCCAACAGAAGCACCTGCAAGGGCTGCGATCAGAAAATTGAAAAGATCCGTGTGTCGAAGAAGACTGTGGACCCAGAGAAACCTCAGCTTGGTCTAATCGATCGCTGGTACCACACCGGCTGCTTTGTGAGTCGTCGGGAGGAACTGATATTTAAACCAGAGTACAGCGCTGCCCAGCTCAAAGGATTCGCAGTTCTACGAGATGAAGACAAAGAGGAGCTGAAGAAACGGCTTCCTGCTGTGAAGAGCGAAGGAAAGAGAAAAGCTGATGAAGTAGATGGAGGAGTCTCtaaaaaacagaagaaagaagatgAAAAACTAGAGCAGAATCTGAAGGATCAAAGCCAGCTGATCTGGGGAATTAAGGACAAGCTGAAGAAGTTCTGCTCCATCAATGACATGAAGGAACTGCTAATTGCTAACAGTCAGGAAGTTCCTTCTGGGGAGTCAAATATTGTGGATCGACTATCAGACTGCATGGCATTTGGGTCCCTGAAGCCTTGTGAGACTTGCAAAGGGCAGCTTGTGTTTAAAAGTGATGCGTATTACTGTACTGGAGACATCTCTGCGTGGACTAAATGTGTATTCAAGACTCAGACGCCTGATCGCAAAGACTGGGTCACCCCTAAGGAGTTCAGTGAGATCCCGTTCCTGAAGAAGTTTAAGTTCAAGCGACAGGACCGTGTGTTTCCTAAAGACGCTCCTCCCGCTGCTGCCACTCCATCATCTGGTTCTACCACTTCAGCTGCCACAAGTGTGTCCAGCGCCAGTAAAAACCTCACTGAGGCACCTGCAGATAAGCCTCTGACTGGAATGAAGCTCCTGGCTGTGGGAAAGCTCAGTAAGAACAAAGATGATCTGAAGAAATTTGTGGAAGATCTGGGAGGAAAAATCACAGGCACGGCCAGCAAAGCTGCTCTCTGCATCAGCAGCAAGAAGGAGATTGAGAAGATGAGTAAGAAAATGGAGGAGGTGAGAGACGCAGGTGTCCGCGTGGTGGCTGATGATTTCCTTACTGACATCAAGGAGTCCGGCAAGGCCCTTCAGGAGCTCATCTCTCTGCATGCCATTTCCCCCTGGGGCGCTGAAGTTAAAGTCGAGGCCCCGGCTGCAGCCGCGGCCACCAAATCCACCGGAGCTCATTCCTCAAAGAGCACCGGCAAAGTCAAAGAGGAGGAAGGTGGAAGCAAATCAAAGAAAATGAAGCTGACAGTGAAAGGAGGAGCTGCAGTAGATCCAGATTCAGGTCTGGAAAACTGTGCTCATGTTCTGGAACAGAATGGAAAGATTTACAGCGCCACACTGGGTCTCGTGGACATCGTCAGAGGGACAAACTCATACTACAAACTACAGCTGCTGGAGGATGACGTTCAAAAGCGgtaCTGGGTGTTTAGATCGTGGGGTCGAGTCGGGACCACCATTGGAGGAAACAAATTGGACAAGTTTTACGATAAGAACTCTGCTATGGACAATTTCTGTGGTGTGTATGAGGAAAAGACAGGGAATGCTTGGGCCTCCAGCAACTTCACAAAGTACCCCAATAAGTTTTACCCTCTGGAGATTGACTACGGACAGGATGAGGAGGCTGTGAAGAAGTTGACTCAAAGTGCAGGTGCCAAATCTCAGCTGGAAAAACCTGTGCAAGACCTCATCCGAATGATCTTCGATGTGGAGAGCATGAAGAAAGCCATGGTGGAGTTTGAGATTGACTTGCAGAAGATGCCTTTGGGAAAACTAAGCAAGCGACAGATCCAGAGTGCTTATTCCCTTCTAAGCGAAGTTCAGCAGGCTGTGGCAGATAGCTCCTCAGAATCACTGATCCTAGATCTGTCTAATCGCTTCTACACACTGATACCGCACGACTTCGGCATGAAGAAACCACCACTATTGAGTAATGTGGATTACATCCAGCAAAAGGTGCAGATGCTGGACAACCTTTTGGACATCGAGGTGGCCTACAGCCTGCTTCGGGGAGGAGTGGAGAACAACGAAAAAGATCCCATTGACATCAACTATGAGAAACTCAAAACCAAAATTGAGGTCGTCGACAAGTCTTCACATGAGGCTCAGCTTATCCTTCAATATGTGAAGAACACACATGCTGCTACTCACAACACCTACACACTGGATGTTGAGGAGATCTTTAAGATTGAGAGGGAGGGCGAGTATCAGCGTTATCGCCCCTTCAAAGAGTTACCCAACCGCCAGCTGCTGTGGCACGGCTCGCGCACCACCAACTATGCTGGTATTCTGTCTCAGGGTCTCCGCATCGCTCCTCCGGAGGCCCCAGtgACGGGTTACATGTTTGGCAAAGGTGTTTACTTTGCTGATATGGTGTCGAAGAGTGCCAACTACTGCCACACGTCTCAGGCTGATCCTGTGGGCCTCATTCTGTTAGGAGAGGTTGCATTAGGGAACATGCATGAACTGAAGAAAGCCTCACACATTACAAAGCTACCAAAGGGTAAACACAGTGTAAAAGGTTTGGGAAGAAGTGCTCCAGACCCAAGAGCTACAGTATCTCTCAATGGAGTGGACATTCCTCTGGGCAAAGGCATGAACACAAATATTGATGACACAAGTCTGCTCTACAACGAGTACATCGTTTATGATGTTTCTCAGGTTAACCTGAAATACCTGCTGAAGATCCGCTTCAACTATCAGACGTCTCTGTGGTGAGACGCCGGTTAGATCTGGAGAGGTTTTTGGATGCCACTGAATCCCCCTGTTACAGCTTTAGCATCAAGAACCAAACAGCACATGGGTTTAGAAATGATTAAATCCGTTCTCTTGCGCTTTGGCAGCACATTCCCCATTGCTCTAGTCTGTTAGTTTGGAGTACTTTAAGTGGTTCTACCCAAATCACAAACTGCATTGTTGCAAATGTGGCCACCTTTCTACAAGCAACATGATTGGACTTCTCTGTGAAATGTTTCTTTATAAGCTACCAACAGTGGATAGGTAGACTGTCTTCCATATGTTTCATAggccttttctttcttttaatagtTTTGCTAAACCTGGATTCAGGTTACTTGTAACACATGTAGTGTTTACGGTTTTGTTCGGCCTCTcgatttaaaacaaataagaatgtACAGTTTTAGGAAAAAAATGTTGTAAGCTAGGATATAGCCTGCTGCAAGCGAGTAATCTTTTACTAGAATTGCCAATGTATGAACAAGTATTTTGTATGTTAAACATGTACCAACCTAGTTTTGCTTTTTTGAGTTTACTGTCCCTTATTGAAACGTACTTGGGCCATTTGAAATGGCTATCAAAATCTAAGCTGCTGTACTCACGCACCTGTAataagttttgttgttgtttttggcaAACATTTCTCCACAGTATTTGTGGACAAAATAAGTTTCCCAAAAAATGTCTTTGCATCAAAAATAAAACGGTTTTTGGCTT

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0006471 protein ADP-ribosylation biological_process
GO:0070212 protein poly-ADP-ribosylation biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0005730 nucleolus cellular_component
GO:0016740 transferase activity molecular_function
GO:1990404 protein ADP-ribosylase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0051287 NAD binding molecular_function

KEGG:

id description
ko03410 Base excision repair
ko04064 NF-kappa B signaling pathway
ko04210 Apoptosis
ko04214 Apoptosis - fly
ko04217 Necroptosis
ko04212 Longevity regulating pathway - worm
ko05415 Diabetic cardiomyopathy
ko03032 DNA replication proteins
ko03036 Chromosome and associated proteins
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-030131-3955 Predicted to enable NAD+ ADP-ribosyltransferase activity and protein ADP-ribosylase activity. Predicted to be involved in double-strand break repair and protein poly-ADP-ribosylation. Predicted to act upstream of or within protein ADP-ribosylation. Predicted to be located in chromosome and nucleus. Predicted to be active in nucleolus. Human ortholog(s) of this gene implicated in several diseases, including arthritis; bacterial meningitis; neurodegenerative disease (multiple); stomach carcinoma; and type 2 diabetes mellitus. Orthologous to human PARP1 (poly(ADP-ribose) polymerase 1).

Ensembl:

ensembl_id ENSDART00000187930

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036673 lncRNA upstream 4235 43637007 ~ 43644134 (+) True XLOC_017594
TCONS_00036672 lncRNA upstream 58588 43588656 ~ 43589781 (+) True XLOC_017593
TCONS_00036671 lncRNA upstream 92853 43548991 ~ 43555516 (+) True XLOC_017592
TCONS_00036670 lncRNA upstream 180387 43439138 ~ 43467982 (+) True XLOC_017591
TCONS_00036669 lncRNA upstream 204673 43439137 ~ 43443696 (+) False XLOC_017591
TCONS_00034926 lncRNA downstream 22233 43712010 ~ 43713530 (+) True XLOC_017596
TCONS_00036675 lncRNA downstream 284756 43974533 ~ 43995913 (+) False XLOC_017598
TCONS_00036674 lncRNA downstream 284756 43974533 ~ 43995913 (+) True XLOC_017598
TCONS_00036676 lncRNA downstream 646229 44336006 ~ 44347159 (+) True XLOC_017603
TCONS_00034935 lncRNA downstream 826386 44516163 ~ 44537787 (+) True XLOC_017605
TCONS_00034920 mRNA upstream 3838 43602810 ~ 43644531 (+) False XLOC_017594
TCONS_00034921 mRNA upstream 23334 43623064 ~ 43625035 (+) False XLOC_017594
TCONS_00034918 mRNA upstream 244670 43396318 ~ 43403699 (+) False XLOC_017587
TCONS_00034916 mRNA upstream 258894 43379029 ~ 43389475 (+) False XLOC_017586
TCONS_00034917 mRNA upstream 258963 43379079 ~ 43389406 (+) True XLOC_017586
TCONS_00034924 mRNA downstream 1431 43691208 ~ 43714392 (+) False XLOC_017596
TCONS_00034925 mRNA downstream 1461 43691238 ~ 43715242 (+) False XLOC_017596
TCONS_00034927 mRNA downstream 235489 43925266 ~ 43968859 (+) False XLOC_017597
TCONS_00034928 mRNA downstream 252501 43942278 ~ 43967977 (+) True XLOC_017597
TCONS_00034929 mRNA downstream 392755 44082532 ~ 44109219 (+) True XLOC_017599
TCONS_00034912 other upstream 638756 43006304 ~ 43009613 (+) True XLOC_017581
TCONS_00034905 other upstream 1015264 42632985 ~ 42633105 (+) True XLOC_017575
TCONS_00034862 other upstream 4316277 39331969 ~ 39332092 (+) True XLOC_017544
TCONS_00034855 other upstream 4602189 38910241 ~ 39046180 (+) True XLOC_017540
TCONS_00034852 other upstream 4873282 38774972 ~ 38775087 (+) True XLOC_017538
TCONS_00034930 other downstream 449968 44139745 ~ 44139861 (+) True XLOC_017600
TCONS_00034931 other downstream 508921 44198698 ~ 44198815 (+) True XLOC_017601
TCONS_00034940 other downstream 1245262 44935039 ~ 44935155 (+) True XLOC_017608
TCONS_00034947 other downstream 2349814 46039591 ~ 46041367 (+) False XLOC_017620
TCONS_00034979 other downstream 2752803 46442580 ~ 46494784 (+) False XLOC_017646

Expression Profile

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