XLOC_017724


Basic Information

Item Value
gene id XLOC_017724
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 51647594 ~ 51667197 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036749
CTCAAGTTCATGTGTGATGATACACAAGAATCATATTATCATATTATCCACCTttataaaaatcatttatttacagaCTGAAGGATGACAGAGTGCATATACATGTCTGTTTAATCATTGATCTCTGATGAAACAAACATCTACCAGCATCGGTACAATGTtgcgaatgttttttttttttaaatgcagtggATAGAATTTCAATATCAATAAaagatagaaaaatattaaagaaactATAGAAGTAGGGCTGGGATGATAAATCAATGTATTATGATACGTGGGTCGATTTTTGGACTGCATTGCCATTCTCTGTTGAATCAGTTCTGAgcttagtttataacagcagatgatgctctaggcttgtttttaacagcagacggcgctctaggctagtttttaacagcagacggcactgtACGCTAATTTTTAAACAGCCAACAACattgtaggctagtttttaacagcagacagtgtgATAGTGTGCTAGGCTGGCTACGATGAAGTGGAGCACCATCCATTGTTAAAACTAGCTGCTTTCAAAAAACtagcagatggcgctttaggatattttttaaacagcagacgacgctctaggctagtttttagaaAGCAGATAGCGCTTTTGGCTAGTTTTtagacagcagatggcgctctaggatatTTTgtaaaacagcagatggcgctctaggctagttttatacagcaggtggtgctctaggctagttttaaacagcagatggtgctctaggctagttttaaacagcaggtggtgctctaggctagttttaaacagcagatggcgctctaggctagtttttaaacaggagatggtgctctaggctagtttttagacaacagatggtgctctaggctagttttcacacagcagacggcgctctagattATTTttcaaacagcagatggcgctctaggctagtttttaaaaaccaaatggcactctaggctagttttaaaacagcagatggggctctaggctagttttaaacagcagatagtgctttaggctaatttttaaacaccagatGACAATCGAGGCTAGTTTACCACCTAGATACAACAGAGTGGGGcaccatctggtgttaaaactaagctagagtgccatctgttgtttaaaaactagctgatggtactctaggctagtctttaaacagcagatggcgctctaagctagttttttcATGTTGAAACTAGCCTAGATTATTATCTGCTGTCTAAACtctagcctaaagcgccatccATCTGCTGTCCATAAGCTAGctgacggcactctaggctagtttttagaaagcaggcggtgctctaggctaatctTTAGACaacagatgttgctctaggctagtttttagacagcagatggcgctctaggctagtttttaaacagctgacggcattctaggctagtttttcgaGAGCAGATagcactctaggctagcttttgGACAGCAGACGGCGATGTAAGCTAGTTTTTAGacaacagacggcgctctaggctagttcttaaaTAGCTGACAGCCCCCTAGGCTAGTTTTtggacagcagatggcgctctaagctagtttttagacagcagacggtgctctaggctacttttaaaacagcagatggggctctaggcttGTTTACAAACAGCAGATAGAGTTTATTCAACAGGATTAATGTAAACAGCTCACTACGAACACTTGCAACTCGCTTATTTTTTATagtaagtaatattattattttttattattattttaatattacttattttttatttattttaatgatgacTATTTTGCGTTTAAAAGATACGTGTAAGGATTGTCAGAGTGAGACAGGTTTGTAAAGcacacagcgccatctgctggtaaaaactaatCTCAAAATTAATTCAAGAGAGAACAGCAATGCATTCAGAAAAAGTAATTATTGATTCATAATGCATGGATTTATTATCCCGGCCCCATATAGAAGCTCACTTAAACTCTGCCTCATACAGCAGCTGGTGTATTTTTAATTTGACCGCGCTCTTCTTGGCGTACGGCAGTCGTCTCAGATACGGCAGTAAACTAAACAAGAACATCTCGTCCTCCAAGTCCTCATTGGCCTCCATGTGCCACTTTCGCTTGCGTCCCGATCCTTGCGAGCCTGACGCAGAGTAATGCGACGCCCCATCCAGCATTCCATGATCACCTTCAAAGTCCTGCACCACGAATGCTGAGTTCCCGTCCGCCGTCCTCTCCTCGTCTTTGTCCTCGTCGTCTCTGTCTTCTTCGGGCTCGTCCGCCGCAAGAGATCTGGACTGGATGAAGGGTGTGAGAAAAGACATCTGCCAGCTGTACTTCCAGCTGCGGTGAGACGTTCCTGATGCTCGCCTACGCTGCTCTGCACGCTTGTCTTTGATGAACATGTCCCGTAAACTCTTCCATCGCCTGCGGCAGTCCTCCTCTGctggggatactcatcccgaggct
>TCONS_00036750
TCCACCTttataaaaatcatttatttacagaCTGAAGGATGACAGAGTGCATATACATGTCTGTTTAATCATTGATCTCTGATGAAACAAACATCTACCAGCATCGGTACAATGTtgcgaatgttttttttttttaaatgcagtggATAGAATTTCAATATCAATAAaagatagaaaaatattaaagaaactATAGAAGTAGGGCTGGGATGATAAATCAATGTATTATGATACGTGGGTCGATTTTTGGACTGCATTGCCATTCTCTGTTGAATCAGTTCTGAgcttagtttataacagcagatgatgctctaggcttgtttttaacagcagacggcgctctaggctagtttttaacagcagacggcactgtACGCTAATTTTTAAACAGCCAACAACattgtaggctagtttttaacagcagacagtgtgATAGTGTGCTAGGCTGGCTACGATGAAGTGGAGCACCATCCATTGTTAAAACTAGCTGCTTTCAAAAAACtagcagatggcgctttaggatattttttaaacagcagacgacgctctaggctagtttttagaaAGCAGATAGCGCTTTTGGCTAGTTTTtagacagcagatggcgctctaggatatTTTgtaaaacagcagatggcgctctaggctagttttatacagcaggtggtgctctaggctagttttaaacagcagatggtgctctaggctagttttaaacagcaggtggtgctctaggctagttttaaacagcagatggcgctctaggctagtttttaaacaggagatggtgctctaggctagtttttagacaacagatggtgctctaggctagttttcacacagcagacggcgctctagattATTTttcaaacagcagatggcgctctaggctagtttttaaaaaccaaatggcactctaggctagttttaaaacagcagatggggctctaggctacttttaaaacagcagatggggctctaggcttGTTTACAAACAGCAGATAGAGTTTATTCAACAGGATTAATGTAAACAGCTCACTACGAACACTTGCAACTCGCTTATTTTTTATagtaagtaatattattattttttattattattttaatattacttattttttatttattttaatgatgacTATTTTGCGTTTAAAAGATACGTGTAAGGATTGTCAGAGTGAGACAGGTTTGTAAAGcacacagcgccatctgctggtaaaaactaatCTCAAAATTAATTCAAGAGAGAACAGCAATGCATTCAGAAAAAGTAATTATTGATTCATAATGCATGGATTTATTATCCCGGCCCCATATAGAAGCTCACTTAAACTCTGCCTCATACAGCAGCTGGTGTATTTTTAATTTGACCGCGCTCTTCTTGGCGTACGGCAGTCGTCTCAGATACGGCAGTAAACTAAACAAGAACATCTCGTCCTCCAAGTCCTCATTGGCCTCCATGTGCCACTTTCGCTTGCGTCCCGATCCTTGCGAGCCTGACGCAGAGTAATGCGACGCCCCATCCAGCATTCCATGATCACCTTCAAAGTCCTGCACCACGAATGCTGAGTTCCCGTCCGCCGTCCTCTCCTCGTCTTTGTCCTCGTCGTCTCTGTCTTCTTCGGGCTCGTCCGCCGCAAGAGATCTGGACTGGATGAAGGGTGTGAGAAAAGACATCTGCCAGCTGTACTTCCAGCTGCGGTGAGACGTTCCTGATGCTCGCCTACGCTGCTCTGCACGCTTGTCTTTGATGAACATGTCCCGTAAACTCTTCCATCGCCTGCGGCAGTCCTCCTCTGctggggatactcatcccgaggct

Function

GO:

id name namespace
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0140053 mitochondrial gene expression biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0032543 mitochondrial translation biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005761 mitochondrial ribosome cellular_component
GO:0000313 organellar ribosome cellular_component
GO:0005840 ribosome cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036749 False 2477 lncRNA 0.42 2 51647594 51667197
TCONS_00036750 True 1822 lncRNA 0.42 3 51647640 51667197

Neighbor

gene id symbol gene type direction distance location
XLOC_017723 CU929372.1 coding upstream 131276 51516202 ~ 51516318 (+)
XLOC_017722 tlr5a coding upstream 164911 51478939 ~ 51482683 (+)
XLOC_017721 thbd coding upstream 170745 51464670 ~ 51476849 (+)
XLOC_017720 CU660013.1 coding upstream 236415 51407080 ~ 51411179 (+)
XLOC_017719 CU660013.4 coding upstream 256305 51389901 ~ 51391289 (+)
XLOC_017725 aida coding downstream 63461 51730658 ~ 51753885 (+)
XLOC_017726 taf1a coding downstream 146235 51813432 ~ 51874288 (+)
XLOC_017727 NA coding downstream 268106 51935303 ~ 52061098 (+)
XLOC_017728 CU179729.1 coding downstream 396830 52064027 ~ 52082500 (+)
XLOC_017729 NA coding downstream 425388 52092585 ~ 52235440 (+)
XLOC_017716 NA non-coding upstream 474090 51168912 ~ 51173504 (+)
XLOC_017714 AL928824.2 non-coding upstream 491493 51062874 ~ 51156101 (+)
XLOC_017730 NA non-coding downstream 532094 52199291 ~ 52203141 (+)
XLOC_017731 NA non-coding downstream 536198 52203395 ~ 52208371 (+)

Expression


Co-expression Network