XLOC_017729


Basic Information

Item Value
gene id XLOC_017729
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 52092585 ~ 52235440 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036434
CATTTTCCTGCATAAGCGTTATTGATTACTCCTAATAGTATTCGCAGTAATATTAAACACTCCTGATAAAACTAACGTGATTAACGGTAAATGTTACGTCACATGCGCTGGGCGGGAAAATGCAGCGTCGGTCACGTGCAGGAAAAAGGCGGCAGGATTGAACTCGTGCTGGAAAcgccggaaaaaaaaaacagcttgtaaATTATCTCGCAGGAATCGATCACAAAATGTGTTTGCTGTTGTGATCTCTTTATTCAGaaTATTTCCATTTCATTCTGTTGAAGTATCCAGCAGCAGCAGTACAGCACAAGTCAGCTGTGTATTGGTTTCTGCTCGACTTTCACCACAGAAACTGTCATCCAAACGCAAGGAAAAGAAGTGTTCAGTGCATGGATTGACTCTCTCTGGAGTTGCTGAAGGACAGACTGAAGGTGCTGCCGAGTCTCTTACTGACGCCGCTGTTTCTCCAACTCCAGCCCCACACAGATGATGAAGATCCTCCGTATTCACGGCCTGCTCTCCTCTGACTGCCCGACTGATAATCCTGCTCTCCGCTGGGGGACAGATTCATCCTCCTCTCCACCTACAGGAACAGTATTCACTGAGATgcatagtagggctgcacaatactgaaCATAAACACATCCATTTCccctaacatttgagcactgttaagggttcttaaacagcgctgattggcCATTTTGttcacacgctcaacagaaatgactgcgattggccgtgaaggtcatcagttcaccaaactcacagcTGTTTAACCACAGTttcagggacactggagcattttgaAGTCTTGTcagtcagctggtttgtctataagctgacatatgagtgatccgctgatgaatcgcagctttaaaacgctccagtgtccctgtatctgtgtgcataattttttttacaggtgTGTGTGTACCTCATGTGTCTGCAGTGTGATGATGTCCAGCTCTAGTCCTCTGTCTGGACAGCTCTTCAGCGCATGAACCACCTCTGCATGTTCAGCCCATCTGCAGTCCACAGAGTTCACAGCCACTATATAATCCCCCTCACGTAGCCCTCcctcctaaaacacacacacacacacacacacacacacacacacacacacacacacactttggatCACATCCCACACACGACCCGCATattaaaagcttttttaaaacactactcCTAAATTTGGATGGGTCGCTGAAAGATCGCCTCCCGCATCAATTAAATTGCACACAAAAGTaatttggcttccctgtaaaatttAATGATGATGAAGAAATTGTGAAGGCACCTCCatgctttcttaggttattaaaggtgttttctgtcactgcttTTTCAGCAACGCATGTAGTGTAAAGCTGTACAATTAATCATCAAAATATGGGGATCTCAATTCAAACACCTACGCAACATAAATTATCTCCGTCATTCTGCGCTGATCAAGAAAAACTGACGGAAAGATCCGTTTTTACCCTTTTCAATAAGTTACAAAAGgtacaataacaaaaaaacagaagTAGTGTGAGCAGTTTATAGTTTAGGTATAAACAGTGATGTTTACAGTACAGATTAACATTTAACGCAACTTGACGCTCAAAACCGAAGTTGTGCcaattacattgtttaaccaATAGATGGCAAAAACCAGCCATCTAAAATGtgtcactgaataattcttcacaAATGACACATGTAGTAATGAtacagtgcatgcggaaagtCGATACAGTTGATAGCGATTCACTTTcttcacatttgtttatgttacagccttattccaaaatagattaaattcattgatttcc
>TCONS_00035081
aaTATTTCCATTTCATTCTGTTGAAGTATCCAGCAGCAGCAGTACAGCACAAGTCAGCTGTGTATTGGTTTCTGCTCGACTTTCACCACAGAAACTGTCATCCAAACGCAAGGAAAAGAAGTGTTCAGTGCATGGATTGACTCTCTCTGGAGTTGCTGAAGGACAGACTGAAGGTGCTGCCGAGTCTCTTACTGACGCCGCTGTTTCTCCAACTCCAGCCCCACACAGATGATGAAGATCCTCCGTATTCACGGCCTGCTCTCCTCTGACTGCCCGACTGATAATCCTGCTCTCCGCTGGGGGACAGATTCATCCTCCTCTCCACCTACAGGAACAGTATTCACTGAGATgcatagtagggctgcacaatactgaaCATAAACACATCCATTTCccctaacatttgagcactgttaagggttcttaaacagcgctgattggcCATTTTGttcacacgctcaacagaaatgactgcgattggccgtgaaggtcatcagttcaccaaactcacagcTGTTTAACCACAGTttcagggacactggagcattttgaAGTCTTGTcagtcagctggtttgtctataagctgacatatgagtgatccgctgatgaatcgcagctttaaaacgctccagtgtccctgtatctgtgtgcataattttttttacaggtgTGTGTGTACCTCATGTGTCTGCAGTGTGATGATGTCCAGCTCTAGTCCTCTGTCTGGACAGCTCTTCAGCGCATGAACCACCTCTGCATGTTCAGCCCATCTGCAGTCCACAGAGTTCACAGCCACTATATAATCCCCCTCACGTAGCCCTCcctcctaaaacacacacacacacacacacacacacacacacacacacacacacacactttggatCACATCCCACACACGACCCGCATattaaaagcttttttaaaacactactcCTAAATTTGGATGGGTCGCTGAAAGATCGCCTCCCGCATCAATTAAATTGCACACAAAAGTaatttggcttccctgtaaaatttAATGATGATGAAGAAATTGTGAAGGCACCTCCatgctttcttaggttattaaaggtgttttctgtcactgcttTTTCAGCAACGCATGTAGTGTAAAGCTGTACAATTAATCATCAAAATATGGGGATCTCAATTCAAACACCTACGCAACATAAATTATCTCCGTCATTCTGCGCTGATCAAGAAAAACTGACGGAAAGATCCGTTTTTACCCTTTTCAATAAGTTACAAAAGgtacaataacaaaaaaacagaagTAGTGTGAGCAGTTTATAGTTTAGGTATAAACAGTGATGTTTACAGTACAGATTAACATTTAACGCAACTTGACGCTCAAAACCGAAGTTGTGCcaattacattgtttaaccaATAGATGGCAAAAACCAGCCATCTAAAATGtgtcactgaataattcttcacaAATGACACATGTAGTAATGAtacagtgcatgcggaaagtCGATACAGTTGATAGCGATTCACTTTcttcacatttgtttatgttacagccttattccaaaatagattaaattcattgatttcc

Function

GO:

id name namespace
GO:0000209 protein polyubiquitination biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097674

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036434 False 1823 lncRNA 0.42 3 52092585 52235440
TCONS_00035081 True 1565 lncRNA 0.42 2 52152792 52235440

Neighbor

gene id symbol gene type direction distance location
XLOC_017728 CU179729.1 coding upstream 10085 52064027 ~ 52082500 (+)
XLOC_017727 NA coding upstream 31487 51935303 ~ 52061098 (+)
XLOC_017726 taf1a coding upstream 218297 51813432 ~ 51874288 (+)
XLOC_017725 aida coding upstream 338700 51730658 ~ 51753885 (+)
XLOC_017724 NA coding upstream 425388 51647594 ~ 51667197 (+)
XLOC_017732 CU550702.1 coding downstream 63752 52299192 ~ 52303074 (+)
XLOC_017733 arhgap39 coding downstream 154418 52389858 ~ 52447533 (+)
XLOC_017734 tsta3 coding downstream 223325 52458765 ~ 52488233 (+)
XLOC_017735 GFUS coding downstream 256752 52492192 ~ 52525680 (+)
XLOC_017736 pycr3 coding downstream 293604 52529044 ~ 52544771 (+)
XLOC_017723 CU929372.1 non-coding upstream 576267 51516202 ~ 51516318 (+)
XLOC_017720 CU660013.1 non-coding upstream 681406 51407080 ~ 51411179 (+)
XLOC_017739 NA non-coding downstream 363034 52598474 ~ 52638326 (+)
XLOC_017740 NA non-coding downstream 435419 52670859 ~ 52671192 (+)
XLOC_017742 CU207296.1 non-coding downstream 684416 52919856 ~ 52919986 (+)
XLOC_017743 NA non-coding downstream 708683 52944123 ~ 52949831 (+)

Expression


Co-expression Network