XLOC_017733 (arhgap39)


Basic Information

Item Value
gene id XLOC_017733
gene name arhgap39
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 52389858 ~ 52447533 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035084
ATGAGCCcttctgtatctgtgtgtgtgtataggttgGAATGGGTGGAGATCATCGAGCCGCGCACCCGCGAGCGCATGTACGCCAACCTGCTGACAGGCGAGTGTGTGTGGGACGCCCCGGCCGGCGTTCGCATCAAACGCAGCGGGCAGGACCAATGGTGGGAGCTCTTCGACTCCAAGACGTCCCGCTTCTACTACTACAACGCCTCCACGCAGCGCACGGTCTGGCACCGGCCGCACAGCTGCGACATCATCCCGCTGGCCAAACTGCAGACGCTCAAGCAGAACACAAACACACCCCTCGCCTCCGCAGACAGCAGTCCCGCCCGCAGCGCCGTCAGCACCACCTCCTCACAGGAGCAGGAGGACAAGAGCTGCACCAATAACACCAACACCGAGGACGCAGACAGGTCAGCAACACAAGTGGGTGGTCGGCCGTTTGCACAGTTATCAGCACATGTAATACTGTTCAGATGGGGCACTGGCACCAGAGAGAGGATGCTCATTAAAGTATCAGATCGGGAGCCTAGTTTTCTGACGCAGGGAAACGGATACTCCAGCTCGTCCCCGCGCTCGAGACGCTCATCCAGCAATGCTCCTCCAGACTCAGACACCACCTCGGACCGTCCTGCAGCGCAGTCTCCTTTCCTGAAGAGGGCAGAGTTGAGCGGCACCCAACGGCGCTGTTCGGGAGACTCCCAGCCGTCCTCGCCTCGCTACGCTTATGAGCCTCCTCTCTACGAGGAACCACCCTCAGAATTCCAAGCTCCGCCCATTTACGAGGAACCACCCACTGACATGCACTGCGACCCCGCCTTTTTTGGCACGGATCGTTCTCCGGCACGAAAACCAGGTCTTTATTGTTCCCCGAAACAAAGCCCGTCTCCTTATGGACAACTGGTGCTGACGAGACAGCGTAGCTCTACAGATTACAGCTCCTCTGGTGGCCGGGATTATAACTCGAGTGGGCGGGAGTATAGCGCTCAGCTTGTTTATGTGGAGCAGTCTGGCTCCTCCCCTCGCCTATCGGCTGGATTTTCGTACGGCGGGTCTTTCACGCTGCAGCATAGCCACGATCTTAATGGTGGCAATCGAAAACGGAAGAACAGGAAGCCGTCTTTGCCAGGCGGTGAAGGGGATGGAATGGGGGCGGGACTCGGGGCAATGATTACTCAAGCCCGATTGGCTTGGGAGGCTCAGCAGATGTATGAAAGTGACGGAGCGTCTCCGCTGCCGCTGCCGGGGCCGGTGGTCCGGGCATTCAGTGAGGATGAGGCGCTGGCGCAGCAGGAGATCCACTGGAAACGGGCCACGCTGGACAGACTGGCATTCCCTCAGACGCTACTGGAGAAGAGTCTGTCTGTGCAGACCAACCTGGCATCACCCGAACCTTACCTCCATCCCTCTCAGTCGGAGGATCTGGGAGCATGTTCTCAGTTCGAGGCCAGCCGAAACGCCCGAAACATGATGCCCAGTGCCAGCTGCGGCATTTTCCCAGAGTTCACGCTTCGCAAGCCATCCTCGGAGACGGACATCGAGAACTGGGCATCCAAACACTTCAATAAGCACACGCAGGGTCTGTTCAGGAGGAAAGTGTCCATCGCCAACATGCTGGCCTGGAGCAGCGAGCCCATCAAGAAGCCCATGATCATGACCTCTGACCGGACGGTGAAGCGTGAAGCCGTTGATCTCTTCAAGCTCATCCAGACCTACATGGGGGACCGGCGGGCCAAAGCGGATCCGCTGGCGGTAGCTCTGGAGGTGGCGGTCCGGGGCTGGAGCTGCCAGGGCCTGAGGGATGAGCTCTACATCCAGCTCTGCAGACAAACCACCGAGAACTTCCGCTACGACAGTCTGCAGAGGGGCTGGGAGCTCATGGCCATCTGTCTGGCCTTCTTCCCGCCGACACCTCGCTTCCACAACTACCTGGAGGGCTACATCTACAGACACATGGACCCGCTGAATGACACCAAGGGTACGACACTCTTCACTGCAAACAAACACAGGGGTAAATACTTGAAGGTTTATTTTGGAGATGCAAAATGTATCTGCAAGTCTAGAATCACCCATATAAGTttcttcatctgtgtgtgtgtgtgtgtgtgtggtctGAAGAAGCCATCGGTGGAGGAAATCGCGTACGCTCGTAACGCCATCTTCCGGCCGTCGATGTTCGGCTCTTCTCTGGAGGAGGTGATGGCGATGCAGAAGGAGCGATACCCCGACCAGCAGCTGCCCTGGGTGCAGACGCGCCTCTCTGAGGAGGTGCTGGGACTCAACGGAGACCAGACGGAGGGCATCTTCAGggtGCCTGGAGACATTGATGAAGTAAACGCACTGAAGTTACAGGTGGACCAGTGGAAAGTGCCCACCGGCCTGGAGGACCCACATATTCCAGcgtCTCTGCTGAAGCTGTGGTACCGAGAGCTGGAGGAGCCGGTGATTCCTCATGAGTTTTATGAGCAGTGTGTGATGAACTACGACAGTCCTGCGGCCGCTGTTAATGTCGTCCTCAACCTCCCTCACATCAACAAACTGGTGCTCTGCTACCTCATCCGCTTCCTAcagGTATTTGCTCAACCCGCTAGTGTCTCCATGACTAAGATGGACGTCAGTAATCTAGCGATGGTGATGGCTCCAAACTGCCTGCGCTGCCAGTCGGACGACCCACGCGTCATTTTCGAGAACACGCGCAAAGAAATGAGCTTCATCCGCGTGCTGATCCAGCACCTCGATACCAGCTTCATGGACGGGGTGCTAtag
>TCONS_00035083
ATGAGCCcttctgtatctgtgtgtgtgtataggttgGAATGGGTGGAGATCATCGAGCCGCGCACCCGCGAGCGCATGTACGCCAACCTGCTGACAGGCGAGTGTGTGTGGGACGCCCCGGCCGGCGTTCGCATCAAACGCAGCGGGCAGGACCAATGGTGGGAGCTCTTCGACTCCAAGACGTCCCGCTTCTACTACTACAACGCCTCCACGCAGCGCACGGTCTGGCACCGGCCGCACAGCTGCGACATCATCCCGCTGGCCAAACTGCAGACGCTCAAGCAGAACACAAACACACCCCTCGCCTCCGCAGACAGCAGTCCCGCCCGCAGCGCCGTCAGCACCACCTCCTCACAGGAGCAGGAGGACAAGAGCTGCACCAATAACACCAACACCGAGGACGCAGACAGGTCAGCAACACGCGACCGCGTCACaccagcagacagacaacccactagttcatgtcattcgccagttagttaTATtttgcttaaaaataaaaacaatttctcAATATTTTCTTCTTCAATATTGTCTGTTGTGTGCAGGTTCAGATGGGGCACTGGCACCAGAGAGAGGATGCTCATTAAAGTATCAGATCGGGAGCCTAGTTTTCTGACGCAGGGAAACGGATACTCCAGCTCGTCCCCGCGCTCGAGACGCTCATCCAGCAATGCTCCTCCAGACTCAGACACCACCTCGGACCGTCCTGCAGCGCAGTCTCCTTTCCTGAAGAGGGCAGAGTTGAGCGGCACCCAACGGCGCTGTTCGGGAGACTCCCAGCCGTCCTCGCCTCGCTACGCTTATGAGCCTCCTCTCTACGAGGAACCACCCTCAGAATTCCAAGCTCCGCCCATTTACGAGGAACCACCCACTGACATGCACTGCGACCCCGCCTTTTTTGGCACGGATCGTTCTCCGGCACGAAAACCAGGTCTTTATTGTTCCCCGAAACAAAGCCCTGGGCGGGAGTATAGCGCTGCTGGGCGGGAATATGTTAAGCAGCTTGTTTATGTGGAGCAGTCTGGCTCCTCCCCTCGGTTTCGGACCACAGATCGTCTGATGAGCTACGGGACCAGTTCTAATAGCCTATCGGCTGGATTTTCGTACGGCGGGTCTTTCACGCTGCAGCATAGCCACGATCTTAATGGTGGCAATCGAAAACGGAAGAACAGGAAGCCGTCTTTGCCAGGCGGTGAAGGGGATGGAATGGGGGCGGGACTCGGGGCAATGATTACTCAAGCCCGATTGGCTTGGGAGGCTCAGCAGATGTTACATCATCGAGGGGGCGTGGCTTCTGAATCAGGAGCTAAAGATGGGTATGAAAGTGACGGAGCGTCTCCGCTGCCGCTGCCGGGGCCGGTGGTCCGGGCATTCAGTGAGGATGAGGCGCTGGCGCAGCAGGAGATCCACTGGAAACGGGCCACGCTGGACAGACTGGCATTCCCTCAGACGCTACTGGAGAAGAGTCTGTCTGTGCAGACCAACCTGGCATCACCCGAACCTTACCTCCATCCCTCTCAGTCGGAGGATCTGGGAGCATGTTCTCAGTTCGAGGCCAGCCGAAACGCCCGAAACATGATGCCCAGTGCCAGCTGCGGCATTTTCCCAGAGTTCACGCTTCGCAAGCCATCCTCGGAGACGGACATCGAGAACTGGGCATCCAAACACTTCAATAAGCACACGCAGGGTCTGTTCAGGAGGAAAGTGTCCATCGCCAACATGCTGGCCTGGAGCAGCGAGCCCATCAAGAAGCCCATGATCATGACCTCTGACCGGACGGTGAAGCGTGAAGCCGTTGATCTCTTCAAGCTCATCCAGACCTACATGGGGGACCGGCGGGCCAAAGCGGATCCGCTGGCGGTAGCTCTGGAGGTGGCGGTCCGGGGCTGGAGCTGCCAGGGCCTGAGGGATGAGCTCTACATCCAGCTCTGCAGACAAACCACCGAGAACTTCCGCTACGACAGTCTGCAGAGGGGCTGGGAGCTCATGGCCATCTGTCTGGCCTTCTTCCCGCCGACACCTCGCTTCCACAACTACCTGGAGGGCTACATCTACAGACACATGGACCCGCTGAATGACACCAAGGGAGTGGCGATAAGCAGCTATGCAAAATACTGTTACCGTAAACTCCAGAAAGCTGCCCTCTCCGGAGCCAAGAAGggtctGAAGAAGCCATCGGTGGAGGAAATCGCGTACGCTCGTAACGCCATCTTCCGGCCGTCGATGTTCGGCTCTTCTCTGGAGGAGGTGATGGCGATGCAGAAGGAGCGATACCCCGACCAGCAGCTGCCCTGGGTGCAGACGCGCCTCTCTGAGGAGGTGCTGGGACTCAACGGAGACCAGACGGAGGGCATCTTCAGggtGCCTGGAGACATTGATGAAGTAAACGCACTGAAGTTACAGGTGGACCAGTGGAAAGTGCCCACCGGCCTGGAGGACCCACATATTCCAGcgtCTCTGCTGAAGCTGTGGTACCGAGAGCTGGAGGAGCCGGTGATTCCTCATGAGTTTTATGAGCAGTGTGTGATGAACTACGACAGTCCTGCGGCCGCTGTTAATGTCGTCCTCAACCTCCCTCACATCAACAAACTGGTGCTCTGCTACCTCATCCGCTTCCTAcagGTATTTGCTCAACCCGCTAGTGTCTCCATGACTAAGATGGACGTCAGTAATCTAGCGATGGTGATGGCTCCAAACTGCCTGCGCTGCCAGTCGGACGACCCACGCGTCATTTTCGAGAACACGCGCAAAGAAATGAGCTTCATCCGCGTGCTGATCCAGCACCTCGATACCAGCTTCATGGACGGGGTGCTAtag
>TCONS_00035085
cgtCTCTGCTGAAGCTGTGGTACCGAGAGCTGGAGGAGCCGGTGATTCCTCATGAGTTTTATGAGCAGTGTGTGATGAACTACGACAGTCCTGCGGCCGCTGTTAATGTCGTCCTCAACCTCCCTCACATCAACAAACTGGTGCTCTGCTACCTCATCCGCTTCCTAcagGTATTTGCTCAACCCGCTAGTGTCTCCATGACTAAGATGGACGTCAGTAATCTAGCGATGGTGATGGCTCCAAACTGCCTGCGCTGCCAGTCGGACGACCCACGCGTCATTTTCGAGAACACGCGCAAAGAAATGAGCTTCATCCGCGTGCTGATCCAGCACCTCGATACCAGCTTCATGGACGGGGTGCTAtag

Function

symbol description
arhgap39 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Is expressed in brain; central nervous system; and lens. Orthologous to human ARHGAP39 (Rho GTPase activating protein 39).

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-041014-247 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Is expressed in brain; central nervous system; and lens. Orthologous to human ARHGAP39 (Rho GTPase activating protein 39).

Ensembl:

ensembl_id ENSDARG00000100007

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035084 False 2763 mRNA 0.57 15 52389858 52447533
TCONS_00035083 False 2820 mRNA 0.57 13 52389858 52447533
TCONS_00035085 True 365 mRNA 0.54 2 52442870 52447533

Neighbor

gene id symbol gene type direction distance location
XLOC_017732 CU550702.1 coding upstream 86784 52299192 ~ 52303074 (+)
XLOC_017729 NA coding upstream 154418 52092585 ~ 52235440 (+)
XLOC_017731 NA coding upstream 181487 52203395 ~ 52208371 (+)
XLOC_017730 NA coding upstream 186717 52199291 ~ 52203141 (+)
XLOC_017728 CU179729.1 coding upstream 307358 52064027 ~ 52082500 (+)
XLOC_017734 tsta3 coding downstream 11232 52458765 ~ 52488233 (+)
XLOC_017735 GFUS coding downstream 44659 52492192 ~ 52525680 (+)
XLOC_017736 pycr3 coding downstream 81511 52529044 ~ 52544771 (+)
XLOC_017737 eef1db coding downstream 98653 52546186 ~ 52582645 (+)
XLOC_017738 si:dkey-235d18.5 coding downstream 136999 52584532 ~ 52725696 (+)
XLOC_017739 NA non-coding downstream 150941 52598474 ~ 52638326 (+)
XLOC_017740 NA non-coding downstream 223326 52670859 ~ 52671192 (+)
XLOC_017742 CU207296.1 non-coding downstream 472323 52919856 ~ 52919986 (+)
XLOC_017743 NA non-coding downstream 496590 52944123 ~ 52949831 (+)
XLOC_017744 NA non-coding downstream 687903 53135436 ~ 53152423 (+)

Expression


Co-expression Network