XLOC_017749


Basic Information

Item Value
gene id XLOC_017749
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 53403053 ~ 53404537 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036759
CCGATCTGTGACTAAAATACCTTAATGTGATCTGAACAGGGATATTTGTGgtccgttacaccactaataaACCCGCTTTGTTTATTTCTCCAATATCTGAAGCGCATTTCTAAACAAATttcgaataactgatttattttatctttgtcatgatgacagtgcgTAATATTGGTAAGATTCTAGTATTCAGCCTTAAGTGACatttatggcccatttccactgactggtgcagtacggtacaggtcacctttatcaggcttgcgtttccaccccctatcgccgatccatcttgcagtgtaaacaaaacaGTGACGAACCAGGGACAGGGAACAGGGACTGTTAAAACACTACAGTGACTGTTAAAACACTACAGGGACTGTTGAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTGAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTGAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTGAAACACTACAGGGACTGTTAAAACACTACAGGGGCCGTTAAAACACTCACTACAGGGGCCGTTAAAACACTACAGGGACTGTTGAAACACTACAGGGGCCGTTAAAACACTACAGGGACTGTTGAAACACTACAGGGACTGTTGAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTAAAACACTACAGGGAACCACTACAGGGACTGTTGAAACATCACAGGGACTGTTGAAACACTACAGGGGCCGTTAAAACACTACAGGGACTGTTGAAACACTACAAGGACTGTTGAAACACTACAGGGGCCGTTAAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTAAAACACTACAGGGGCCGTTAAAACACTACAGGGACTGTTGAAA
>TCONS_00036760
TCTCCAATATCTGAAGCGCATTTCTAAACAAATttcgaataactgatttattttatctttgtcatgatgacagtgcgTAATATTGGTAAGATTCTAGTATTCAGCCTTAAGTGACatttatggcccatttccactgactggtgcagtacggtacaggtcacctttatcaggcttgcgtttccaccccctatcgccgatccatcttgcagtgtaaacaaaacaGTGACGAACCAGGGACAGGGAACAGGGACTGTTAAAACACTACAGTGACTGTTAAAACACTACAGGGACTGTTGAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTGAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTGAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTGAAACACTACAGGGACTGTTAAAACACTACAGGGGCCGTTAAAACACTCACTACAGGGGCCGTTAAAACACTACAGGGACTGTTGAAACACTACAGGGGCCGTTAAAACACTACAGGGACTGTTGAAACACTACAGGGACTGTTGAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTAAAACACTACAGGGAACCACTACAGGGACTGTTGAAACATCACAGGGACTGTTGAAACACTACAGGGGCCGTTAAAACACTACAGGGACTGTTGAAACACTACAAGGACTGTTGAAACACTACAGGGGCCGTTAAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTAAAACACTACAGGGGCCGTTAAAACACTACAGGGACTGTTAAAACATTACAGGGACTGTTGAAACAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036759 False 982 lncRNA 0.43 2 53403053 53404514
TCONS_00036760 True 919 lncRNA 0.43 3 53403139 53404537

Neighbor

gene id symbol gene type direction distance location
XLOC_017748 cdc40 coding upstream 1054 53368611 ~ 53401999 (+)
XLOC_017747 gpr6 coding upstream 123306 53278746 ~ 53279747 (+)
XLOC_017746 FIG4 coding upstream 140743 53181017 ~ 53262310 (+)
XLOC_017745 CABZ01086877.1 coding upstream 213178 53160860 ~ 53189875 (+)
XLOC_017744 NA coding upstream 250630 53135436 ~ 53152423 (+)
XLOC_017750 apobb.2 coding downstream 35128 53439665 ~ 53470252 (+)
XLOC_017751 bub1ba coding downstream 70426 53474963 ~ 53509973 (+)
XLOC_017752 pak6b coding downstream 117111 53521648 ~ 53568849 (+)
XLOC_017753 myh6 coding downstream 172965 53577502 ~ 53583436 (+)
XLOC_017754 slc25a47a coding downstream 223997 53628534 ~ 53641863 (+)
XLOC_017743 NA non-coding upstream 453222 52944123 ~ 52949831 (+)
XLOC_017742 CU207296.1 non-coding upstream 483067 52919856 ~ 52919986 (+)
XLOC_017740 NA non-coding upstream 731861 52670859 ~ 52671192 (+)
XLOC_017739 NA non-coding upstream 764727 52598474 ~ 52638326 (+)
XLOC_017755 NA non-coding downstream 397984 53802521 ~ 53810931 (+)
XLOC_017756 NA non-coding downstream 460596 53865133 ~ 53870405 (+)
XLOC_017757 NA non-coding downstream 493546 53898083 ~ 53903358 (+)
XLOC_017763 NA non-coding downstream 653459 54057996 ~ 54059266 (+)
XLOC_017765 CU633785.1 non-coding downstream 684443 54088980 ~ 54107941 (+)

Expression


Co-expression Network