RNA id: TCONS_00036759


Basic Information

Item Value
RNA id TCONS_00036759
length 982
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_017749
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 53403053 ~ 53404537 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGATCTGTGACTAAAATACCTTAATGTGATCTGAACAGGGATATTTGTGgtccgttacaccactaataaACCCGCTTTGTTTATTTCTCCAATATCTGAAGCGCATTTCTAAACAAATttcgaataactgatttattttatctttgtcatgatgacagtgcgTAATATTGGTAAGATTCTAGTATTCAGCCTTAAGTGACatttatggcccatttccactgactggtgcagtacggtacaggtcacctttatcaggcttgcgtttccaccccctatcgccgatccatcttgcagtgtaaacaaaacaGTGACGAACCAGGGACAGGGAACAGGGACTGTTAAAACACTACAGTGACTGTTAAAACACTACAGGGACTGTTGAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTGAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTGAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTGAAACACTACAGGGACTGTTAAAACACTACAGGGGCCGTTAAAACACTCACTACAGGGGCCGTTAAAACACTACAGGGACTGTTGAAACACTACAGGGGCCGTTAAAACACTACAGGGACTGTTGAAACACTACAGGGACTGTTGAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTAAAACACTACAGGGAACCACTACAGGGACTGTTGAAACATCACAGGGACTGTTGAAACACTACAGGGGCCGTTAAAACACTACAGGGACTGTTGAAACACTACAAGGACTGTTGAAACACTACAGGGGCCGTTAAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTAAAACACTACAGGGACTGTTAAAACACTACAGGGGCCGTTAAAACACTACAGGGACTGTTGAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036436 lncRNA upstream 250630 53135436 ~ 53152423 (+) True XLOC_017744
TCONS_00036758 lncRNA upstream 453222 52944123 ~ 52949831 (+) True XLOC_017743
TCONS_00036435 lncRNA upstream 731861 52670859 ~ 52671192 (+) True XLOC_017740
TCONS_00036757 lncRNA upstream 764727 52598474 ~ 52638326 (+) True XLOC_017739
TCONS_00036756 lncRNA upstream 805687 52589298 ~ 52597366 (+) False XLOC_017738
TCONS_00036761 lncRNA downstream 35889 53440403 ~ 53456400 (+) False XLOC_017750
TCONS_00035110 lncRNA downstream 81505 53486019 ~ 53497162 (+) True XLOC_017751
TCONS_00035115 lncRNA downstream 224020 53628534 ~ 53635434 (+) False XLOC_017754
TCONS_00035117 lncRNA downstream 398007 53802521 ~ 53810931 (+) True XLOC_017755
TCONS_00035118 lncRNA downstream 460619 53865133 ~ 53870405 (+) False XLOC_017756
TCONS_00035104 mRNA upstream 1054 53368611 ~ 53401999 (+) True XLOC_017748
TCONS_00035103 mRNA upstream 123306 53278746 ~ 53279747 (+) True XLOC_017747
TCONS_00035101 mRNA upstream 140743 53181017 ~ 53262310 (+) False XLOC_017746
TCONS_00035102 mRNA upstream 140743 53181125 ~ 53262310 (+) True XLOC_017746
TCONS_00035100 mRNA upstream 213178 53160860 ~ 53189875 (+) True XLOC_017745
TCONS_00035105 mRNA downstream 35151 53439665 ~ 53470252 (+) False XLOC_017750
TCONS_00035106 mRNA downstream 37421 53441935 ~ 53470050 (+) True XLOC_017750
TCONS_00035107 mRNA downstream 70449 53474963 ~ 53509973 (+) False XLOC_017751
TCONS_00035108 mRNA downstream 71297 53475811 ~ 53509867 (+) False XLOC_017751
TCONS_00035109 mRNA downstream 79785 53484299 ~ 53495286 (+) False XLOC_017751
TCONS_00035099 other upstream 483067 52919856 ~ 52919986 (+) True XLOC_017742
TCONS_00035075 other upstream 1886735 51516202 ~ 51516318 (+) True XLOC_017723
TCONS_00035066 other upstream 2191005 51211932 ~ 51212048 (+) True XLOC_017717
TCONS_00035033 other upstream 4369935 49033004 ~ 49033118 (+) True XLOC_017695
TCONS_00035023 other upstream 4789617 48613321 ~ 48613436 (+) True XLOC_017687

Expression Profile

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