RNA id: TCONS_00036436


Basic Information

Item Value
RNA id TCONS_00036436
length 1493
lncRNA type inter_gene
GC content 0.55
exon number 3
gene id XLOC_017744
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 53135436 ~ 53152423 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctcacataataaaaaaaaacatttaacctcAAATCAatctatttgtgtttatttattcattaaatgtaTTTGGGAGATATAGATGTATAGACTCGCAAAACTCACAGTAAACAGCGAATAAACTGCGCATAAATTAAGTTAACCGTGTTGTGGTGTTGAAGTGTTTTCGCCTGAGCTCATGGGGGGCAGATGCACACAAAGGCTCTTTGTTGTGCTCGTCCAATCAGGCGCAGCGGAGGACAGATCAGGCCGCGCCAGCCAATAGGAGCGTTCGATCCTCGCAAACTGGGCGGGTCTTGCAATTTGGATGCCGTGTGATGCTCGGTCGCCGGTGCAAACGGGCGGACGAACGGACACAGGGGCTGCAGCTCTGCGTCGACCGCGCGCTCCACTGACCAAACCTTTACTACCCAGGGGTTATTTACGAGCTAGTGTGCGAGCGCTGGGTGGGAACGGCCCAGCAGCATCCCTGATGTGAGCACAGTGGGATTGAAGGATGGATACACGGGCCACACCTGTGCGCCAGCTGCGTTACCTGCGGACCTGTTGGAGACCACCGGGCACCGACGCGCGGCTCTGGGCGACTGACAGCCCGGCGATGGCGTTGTGACCGGCGGTTACCTTATGGGGCCCCGTGCGCATCAACGCGCCCGCTGGATTATCGTAGCTCGGATTCAGACTGGCTTCCGTTCGGTTACCGACTGGACCTTCtctcagtgtgtgtctgtgtgtgtgagtgtgtttttcaGACAAAGACCCTGCGCGTTATAAAAGCGACGTGTTATGGATGCGGTTCGGCTGGACGGGTTGAACCCACCGGCGGAAAACGGCAATGTGTCGCAGTCCGAACCGCACAAGCGGCTCTCGCAGGTGGACACGGTGGTTCTGCCGTTCCTCGGCGGGTTCGGGAGGTACCAGCGGCGGCTGGTGGCTCTAACGTGGATCCCGGCGTTCCTCATTTCATTCAGCCAGTTTTCGGATCACTTTCTACTCGGCCAACCGGACAGGAAGTGCGTCCGGCCGGATCAGGGCAGCACGGGGAACGGGACGGATCGGGATTTGTTCGTGGAGGCGTTCGCGAACGGAACCGACAACAGCTTCGTAACGGCGTGTTTGTGCTCGGAGTGGCGGTTTGATCTGCAGTCGGGACTGCAGCAGAATGTGGTCACCAAGTGGACTCTGGTGTGTGACGGCGAGTGGAAAGTTCACATCGCCAAGTTTTCTCTGTTGGTGGGCTCCATCTTCGGCTACTTACTGATGGGAGCCATGGCAGACTGGCTGGGTCGTATCCCGGTGCTGCTGGTCTCAGTGTTGTCAGTGCTGGTGTTTGGTCTGGCTGTGGCGTTCTCGGTGGACATGTCCATGTTCAGCACGCTACGCTTCTTTGAGGGATTCTGCCTGGCTGCTGTCAGACTGACGCTTTATGTCCTCAGTAAGTCTacaacctaaaaaaataaaatgaatatatatatatatatatatataattcagtc

Function

GO:

id name namespace
GO:0051020 GTPase binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036758 lncRNA upstream 185605 52944123 ~ 52949831 (+) True XLOC_017743
TCONS_00036435 lncRNA upstream 464244 52670859 ~ 52671192 (+) True XLOC_017740
TCONS_00036757 lncRNA upstream 497110 52598474 ~ 52638326 (+) True XLOC_017739
TCONS_00036756 lncRNA upstream 538070 52589298 ~ 52597366 (+) False XLOC_017738
TCONS_00036755 lncRNA upstream 590665 52543357 ~ 52544771 (+) True XLOC_017736
TCONS_00036759 lncRNA downstream 250630 53403053 ~ 53404514 (+) False XLOC_017749
TCONS_00036760 lncRNA downstream 250716 53403139 ~ 53404537 (+) True XLOC_017749
TCONS_00036761 lncRNA downstream 287980 53440403 ~ 53456400 (+) False XLOC_017750
TCONS_00035110 lncRNA downstream 333596 53486019 ~ 53497162 (+) True XLOC_017751
TCONS_00035115 lncRNA downstream 476111 53628534 ~ 53635434 (+) False XLOC_017754
TCONS_00035098 mRNA upstream 319846 52774730 ~ 52815590 (+) True XLOC_017741
TCONS_00035096 mRNA upstream 409740 52584532 ~ 52725696 (+) False XLOC_017738
TCONS_00035097 mRNA upstream 538531 52595220 ~ 52596905 (+) True XLOC_017738
TCONS_00035095 mRNA upstream 560392 52554420 ~ 52575044 (+) True XLOC_017737
TCONS_00035094 mRNA upstream 564792 52554352 ~ 52570644 (+) False XLOC_017737
TCONS_00035100 mRNA downstream 8437 53160860 ~ 53189875 (+) True XLOC_017745
TCONS_00035101 mRNA downstream 28594 53181017 ~ 53262310 (+) False XLOC_017746
TCONS_00035102 mRNA downstream 28702 53181125 ~ 53262310 (+) True XLOC_017746
TCONS_00035103 mRNA downstream 126323 53278746 ~ 53279747 (+) True XLOC_017747
TCONS_00035104 mRNA downstream 216188 53368611 ~ 53401999 (+) True XLOC_017748
TCONS_00035099 other upstream 215450 52919856 ~ 52919986 (+) True XLOC_017742
TCONS_00035075 other upstream 1619118 51516202 ~ 51516318 (+) True XLOC_017723
TCONS_00035066 other upstream 1923388 51211932 ~ 51212048 (+) True XLOC_017717
TCONS_00035033 other upstream 4102318 49033004 ~ 49033118 (+) True XLOC_017695
TCONS_00035023 other upstream 4522000 48613321 ~ 48613436 (+) True XLOC_017687

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_08156225_08174249.mRNA True 2998 mRNA 0.52 10 CI01000029 8155914 ~ 8175136 (+)