RNA id: TCONS_00035103


Basic Information

Item Value
RNA id TCONS_00035103
length 1002
RNA type mRNA
GC content 0.54
exon number 1
gene id XLOC_017747
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 53278746 ~ 53279747 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAACGAGAGCGAATCTCTCACCAATGAGAGCGCTATGGGTTTCCCATCATCCTCCTGGCTGGAAGCCGAAACCTTCGCCTCAAACGGCACCCTGGCGCTCTCGTCTGCCAGCCCAAACTTCCACGTGAACCCGTGGGACATTATGCTGTGCCTGTCCGGGACGGTGATCGCCTGTGAGAACGCCATCGTGGTGGCCATCATCTTCTACACGCCCACATTGCGCAACCCCATGTTTGTGCTGATCGGCAGTCTGGCCACCGCAGACCTTCTAGCCGGCATGGGATTAATCCTGAACTTCGCGTTCCAGTATCTGGTGTCCTCCGAAACCATCAGTCTGATTACTGTGGGATTCCTGGTGGCTTCGTTTACGGCGTCCATCAGCAGCCTGTTGGCGATCACCGTCGACCGCTACCTGTCGCTCTACAATGCCCTCACATACTTCTCCGAGAAAACTCTGCATTATGTGCATCTGATGCTGGTGGGCACGTGGGGTGCGTCTCTGTGTTTGGGACTTCTGCCTGTTTTGGGCTGGAACTGTTTGGACGATGCGTCCACATGCAGTATTGTGCGTCCACTTAAGCGCAGCAACCTCACACTCCTCGCCACGTcgttcttcatcatcttcatcctcatgCTAAGCCTTTATTTTAAGATCTGCAAGATTGTGTGTCGTCACGCGCATCAGATTGCATTGCAGCAGCATTTTTTTACTACTTCACATTATGTGGCTACTAAAAAAGGCGTCTCGACGCTGGCCATCATTTTGGGGACATTTGGCGCCAGCTGGCTGCCCTTCGCTATTTACTGTCTGGTTGGGGAGCGCGAGTATCCGCCGGTGTACACGTACGCCACACTGCTGCCCGCTACATACAACTCCATGATCAACCCCATCATCTATGCCTACAGAAACACAGAGATCCAGCGCTCCATACACATGCTGTTCTGCGGATGCTTTCAGAGCAACGGCTCGTACCGCTCCAGATCGCCCAGTGAGGTCTAG

Function

GO: NA

KEGG:

id description
ko04030 G protein-coupled receptors

Ensembl:

ensembl_id ENSDART00000074249

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036436 lncRNA upstream 126323 53135436 ~ 53152423 (+) True XLOC_017744
TCONS_00036758 lncRNA upstream 328915 52944123 ~ 52949831 (+) True XLOC_017743
TCONS_00036435 lncRNA upstream 607554 52670859 ~ 52671192 (+) True XLOC_017740
TCONS_00036757 lncRNA upstream 640420 52598474 ~ 52638326 (+) True XLOC_017739
TCONS_00036756 lncRNA upstream 681380 52589298 ~ 52597366 (+) False XLOC_017738
TCONS_00036759 lncRNA downstream 123306 53403053 ~ 53404514 (+) False XLOC_017749
TCONS_00036760 lncRNA downstream 123392 53403139 ~ 53404537 (+) True XLOC_017749
TCONS_00036761 lncRNA downstream 160656 53440403 ~ 53456400 (+) False XLOC_017750
TCONS_00035110 lncRNA downstream 206272 53486019 ~ 53497162 (+) True XLOC_017751
TCONS_00035115 lncRNA downstream 348787 53628534 ~ 53635434 (+) False XLOC_017754
TCONS_00035101 mRNA upstream 16436 53181017 ~ 53262310 (+) False XLOC_017746
TCONS_00035102 mRNA upstream 16436 53181125 ~ 53262310 (+) True XLOC_017746
TCONS_00035100 mRNA upstream 88871 53160860 ~ 53189875 (+) True XLOC_017745
TCONS_00035098 mRNA upstream 463156 52774730 ~ 52815590 (+) True XLOC_017741
TCONS_00035096 mRNA upstream 553050 52584532 ~ 52725696 (+) False XLOC_017738
TCONS_00035104 mRNA downstream 88864 53368611 ~ 53401999 (+) True XLOC_017748
TCONS_00035105 mRNA downstream 159918 53439665 ~ 53470252 (+) False XLOC_017750
TCONS_00035106 mRNA downstream 162188 53441935 ~ 53470050 (+) True XLOC_017750
TCONS_00035107 mRNA downstream 195216 53474963 ~ 53509973 (+) False XLOC_017751
TCONS_00035108 mRNA downstream 196064 53475811 ~ 53509867 (+) False XLOC_017751
TCONS_00035099 other upstream 358760 52919856 ~ 52919986 (+) True XLOC_017742
TCONS_00035075 other upstream 1762428 51516202 ~ 51516318 (+) True XLOC_017723
TCONS_00035066 other upstream 2066698 51211932 ~ 51212048 (+) True XLOC_017717
TCONS_00035033 other upstream 4245628 49033004 ~ 49033118 (+) True XLOC_017695
TCONS_00035023 other upstream 4665310 48613321 ~ 48613436 (+) True XLOC_017687

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_08367350_08368348.mRNA True 2171 mRNA 0.45 1 CI01000029 8366344 ~ 8368514 (+)
bowfin (Amia calva) AMCG00010897 True 987 mRNA 0.58 1 CM030133.1 3549465 ~ 3550451 (+)