XLOC_017890 (b4galt6)


Basic Information

Item Value
gene id XLOC_017890
gene name b4galt6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 6163932 ~ 6196989 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035309
ATTATCCAGATGGAAGTAACTCCAGCGAGTATATCGCTCAGCCAACCACATACCTCCCAGAGAACTTCACATATGCTCAGAACCTGCCCTGTCCAGAACGGTTACCTTCTATGAAGGGTCAGATGGATGTCAACATGACAGAGGTTCCTATGGAGGAGATTGAACTGAGACTCAAACATATGGACATTCAATTTGGAGGCCACTGGAAGCCCAAAGATTGCAAACCACGCTGGAAGGTGGCCATATTAATCCCCTTTAGGAATCGCCATGAGCATCTTCCCATTCTATTTCAGCACCTTACTCCAATGCTCCAACGCCAACGCTTGCAGTTTGCCTTTTATGTCATTGAACAGACGGGTACTCAGCCGTTTAACCGTGCCATGCTGTTTAACGTGGGCTTTAAAGAGGCTATGAAAGACCTGGACTGGGACTGTGTGGTGTTTCACGACGTCGATCACATTCCAGAAAACGACCGTAATTACTACGGCTGTGGTCAGATGCCTCGACACTTCGCCGCCAAGCTGGACAAATACATGTACATcctTCCCTACAATGAGTTTTTTGGTGGAGTGAGTGGACTTACTGTTGAACAGTTTCTCAAGATCAATGGCTTTCCCAATGCATTCTGGGGCTGGGGAGGAGAGGACGATGACCTCTGGAACAGgGTTCATTATGCAGGCTTCAATGTTACCAGGCCAGAAGGTGATATTGGCAAATACAAATCTATCCCCCATCACCACAGAGGAGAAGTGCAGTTCTTGGGAAGGTACAAGTTGCTGAGGTACTCCAAAGAGCGACAGCATCTGGACGGCTTGAACAATCTGCAGTACTCTCCGGAAATCTCTCTGAGCAACCTGTATAAGAACATCACAGTCAACCTCAATCCTGAGCTCGCCCCCATTGCAGAGTACTGACAGGCTCAGCGTGACCAATCCTTCCCCGCCCCTCGAGTCAGAAAATGTGATGTATCGATGCCAAACGCCCTTAAAAACAGGAGCAACGAGGGCAAAGGCCTGCCTAATGCACAGTTAATTGCGTGACGtgagtgtgtgcgcgcgtgcggaTCTACTGGATCATATCTGTGAAAGTGTACTAGCGTGACTGCGTCCGTTCAATTGCATGTTTCTCTATGTCCATGCTGGCTTTAGCGAATCCGATcgcaacacataaaaaaaaagaggTGGGGAGTGCCAGCGTCAACGAATCAGATGTTTACTGCGAAGCCTTAATTGAATTTTATAGGCTATCAAACGCTAGATCCAGTCATCTGTGCTTACATTGTAGAAAGCTTGGTTTTACATTGCAACAGCACTATATACTTGACGCCAATAGACATTTTTGTCATGTTCTGTTaatatcaaattttttttatatacatatctaccgtttttttttaaagagaaattgTCTAGATGATGTTATTGCAGTTTAAATGGATGTATTTTAAAACTGTCCTTCACCTTTTTTTGTAATCTTATGGAATACATCTCACCTTGGTGGTGTGTAATGGTTGTTTTTTTTCAACAGTCCCATGGCTATACAGAATGCTGACAAGTTGCATGAATTACCCAGACTACCCTGTAAATAACTGGCCTTTTAAACAATGCTTTAGCTTTGTCCCCTAAAAGACGCCTGTGGTTCCAATGGAAACACTCTTCTTTTCTGGCAGCTATTagttgtttttgttcattttaagtgatttttaaaaaaaaatcttcaatggTGTGGGACACTAcagacatataaataaaaaaaaagtaaaaaaaaaaaaaaaacaacagcaatgaCCGTAGAATGCAGGACAACAAATCAAAACCAACATCAGATATCATCACCTACTGCAtgccttaatttattttttgttacatgattatttggtgtcttAAACCTTTAGTCCTAttgaatgtctttttttttccgtCTTTGCTTTTGTTTATAGCATAATCATTCTCACATCTTGCTTTTTGAAGTGCACTCCTCAGTAGATGTGACTGAAGCGATAGCGAGGTGTTTACGAGACAGGTCGTTCGCAGGAGGACCTGATATTCAATCGGGTTTGTAGCTGCTAAAGCCAAAACGCCCTTTACTGGGTTTGGCGTGTATTTCAacctgtgtttttgtgttttgttttgttttgtttgtgtgcgtAGCTCTCCGTGTGAAGGTTGTGCTCCCGTAGGGCCAAAATGAGAGGGCGACAGCATTGTTTGCCCTTGAATGGCATTCGGAGCACACTTGGGCCATGACAACTTTATGCTGTTAAAGTTTCGAGCATTACAAGCTGTTGGAAATCTTTTTTTGGAAGACTATTGGTTGGTTTATGTTTGCCTTTTttgtatataattttaatttttggagtTGTACCATAAGTtgctttattttgtgtatttttatttttaagttattatATACGTGTTCTAAAACTGCTGTTTCATGTCCTCTCATACATCCTGTCTGTCTGTGCGCGCTCATGTATGTTTGTGTCCACTTGAAGAATTACACATCGAGGGAGAGATTTTAGCAGCGGCATTAACTGGACTTCTAATTCTTGAAGTTGAGACACTCACAGCTCACAAAACATTTTGCTTTTGTAGATTCTTTCCATCTGCATATTTTCATTTCACATTTTCTGAATGGACGCTTTGCAAAACCCTAGTACAGTCTTACTACTCTTGTGGTGACCCCGACGTGATCTCCAGTACTCAGTCTGCTGTTTACAGTCTCCTTTTAAACAATCAGACTTAAAATTGGGTCTAATCAGACCTGTTTACTGTGGTTACGGGTTACAAATACCATTTGACCAACTCAAGAATTAAAAATTCTTGTTATTTCATAAACCagatgtaatataaatataaaaatggaggTTACTGGTGCCAAAGTCTGCTTTTTCGCTCTCCCACTGTTTTTAGCATTGTATGTTGAAATGTAGCTCAATATAAACGTTTGATCCGGTCGCTAAAAGTGACTTGTTTGTTTCTGTATGGGTGAGTCTGTGTATGTCATGACCACATGTTGCATACATATGCAGTTTAATATGAGAGGATAGCTCTAGGCTATGACATGGAAAACTCACCATGCTTTTCCACTGCACACGGTCAACCATTTACATAAACAAAATTTAGGCAAAGCTGGAGCAAATGTGAGTTGGCTTGCACCCCGTGTTTGTGTTGAAGTGGCTAGTGAGAAATAACAACTTGTTGGGTGTTTGACGTAGAAATAGAGGCGTTTTAGAAGGAGTATAAGCTTTTGAAGAGGGGAAGTGTGGCATACATGGTTTTCAGAGTGTTCAAATAAACAAGTATCATTCCACCTGTCACAGTGCACTGTTTTCTTATTTATCCAGGCGTGAGGCCGCACTTTAGTTTGGAAATGGATTAATGGTGGAGTCTTGTGCTCATTATTATCAGACAGGGCTGTTAGGGATTGCTCTAATCATTAGCTTTTGCACTGCTGCAAAGTGCTTGGTTGCAAAGTTTGAGACTGAAAATGACACCTTGTTCTTAAAGTATGGTGGGATGCAATATGAATATTGAATGTTTAggtcatttatttagtttgtttttggtGGTGACGCCATTTTCATGACATaactttataacttttttttttgtttttttgttttttaaaggagAAAGGTACTTGTGAGTGAGACTGCTCTGGTGTGTTTGGTTCTGGCATTTAGCTTTTTGGGGAAGCTTTTATTTTCAGTGCTGTCATCTGTCCGCTAATTTGCATTCATATCATCTCATTTTCCAGCCCTTTCATAGCTGCTCCATTCTGTCAGAAAATATCcagaaaatacaacaaacaatagatagagagtttaaaaaaaaaagatttattcacCATTACAGATCTGTAATGTGTCGAGTGTTACATTTTTGCAGTATTCATATTTGTGCcttgagtttttaaaaataaatatttattttttttccactttcaCTTTATTTGTTGAGATGTGCAGTGGGGTGCGTGTGgatggtgtttaaaaataaaccGGGTGCACATTTacataaatttttcttttttcatttttgttatttCGATCTGGAGCTCTGTCTCCTAAATCCGAAATGTCTGCTGGTCATTGAATGGGACTGAAAAACGTGGGATTTCTCTTGCTGTTCTCTCGATGTTTCTTAAACGCCGAGGGTCCACTTTAACTGTAACACCAGTGTGAAAAGCAGAATGTCTTGAGATGCCTGCTGTTTTGACTGACATGTACAATCCTGGCTCCAGatttctcttttgttttgttttcgttGTTGTACCAGTCTGTTCACTGCGTTTCGCTCTGTAATGATCATTAAAAGACTTTATAGTTGAAAACTT
>TCONS_00035310
AAAATGCATCGCGCTGACCGCCCGCCGAGCACGGACGGCGTTTGATGTAGcacgttttattatttatttatttttcgatCTGGAAATTTCTTGACTTTGTTGGGAGAGCGAGCGAGCACTGCGGCCTTGCATCCAGCTGAATGAACGATGCGGACTTTACCAGCAGCCTGATTTAGCACCGCATTTCCCACCCGGATGACCGTTTTCAGCACAGCCAACAGCGTCTCTTTTCTGCGATCTGCGTGTTTTTATGGGAGTGACGGATAGCTAGTAGCCGAGACACAATGTGGAAGTGGAGGCGGCTGATGCGGTTGTCCAACCGCTCCTTAATGGCCTTCATCTTTTTCTTCTCCATGTCCACGACCTGCCTCTACTTTATTTATGTGGCTCCCGGGATAGTCAACACATATTTCTTCATGGTACAGGCTCAGGGTATCATGTTGCGAGACAATGTGCGGACCATTGGTCACATGATCAGACTATACACCAACAAGAACAGTACACTCAACGGCACAGATTATCCAGATGGAAGTAACTCCAGCGAGTATATCGCTCAGCCAACCACATACCTCCCAGAGAACTTCACATATGCTCAGAACCTGCCCTGTCCAGAACGGTTACCTTCTATGAAGGGTCAGATGGATGTCAACATGACAGAGGTTCCTATGGAGGAGATTGAACTGAGACTCAAACATATGGACATTCAATTTGGAGGCCACTGGAAGCCCAAAGATTGCAAACCACGCTGGAAGGTGGCCATATTAATCCCCTTTAGGAATCGCCATGAGCATCTTCCCATTCTATTTCAGCACCTTACTCCAATGCTCCAACGCCAACGCTTGCAGTTTGCCTTTTATGTCATTGAACAGACGGGTACTCAGCCGTTTAACCGTGCCATGCTGTTTAACGTGGGCTTTAAAGAGGCTATGAAAGACCTGGACTGGGACTGTGTGGTGTTTCACGACGTCGATCACATTCCAGAAAACGACCGTAATTACTACGGCTGTGGTCAGATGCCTCGACACTTCGCCGCCAAGCTGGACAAATACATGTACATcctTCCCTACAATGAGTTTTTTGGTGGAGTGAGTGGACTTACTGTTGAACAGTTTCTCAAGATCAATGGCTTTCCCAATGCATTCTGGGGCTGGGGAGGAGAGGACGATGACCTCTGGAACAGgGTTCATTATGCAGGCTTCAATGTTACCAGGCCAGAAGGTGATATTGGCAAATACAAATCTATCCCCCATCACCACAGAGGAGAAGTGCAGTTCTTGGGAAGGTACAAGTTGCTGAGGTACTCCAAAGAGCGACAGCATCTGGACGGCTTGAACAATCTGCAGTACTCTCCGGAAATCTCTCTGAGCAACCTGTATAAGAACATCACAGTCAACCTCAATCCTGAGCTCGCCCCCATTGCAGAGTACTGACAGGCTCAGCGTGACCAATCCTTCCCCGCCCCTCGAGTCAGAAAATGTGATGTATCGATGCCAAACGCCCTTAAAAACAGGAGCAACGAGGGCAAAGGCCTGCCTAATGCACAGTTAATTGCGTGACGtgagtgtgtgcgcgcgtgcggaTCTACTGGATCATATCTGTGAAAGTGTACTAGCGTGACTGCGTCCGTTCAATTGCATGTTTCTCTATGTCCATGCTGGCTTTAGCGAATCCGATcgcaacacataaaaaaaaagaggTGGGGAGTGCCAGCGTCAACGAATCAGATGTTTACTGCGAAGCCTTAATTGAATTTTATAGGCTATCAAACGCTAGATCCAGTCATCTGTGCTTACATTGTAGAAAGCTTGGTTTTACATTGCAACAGCACTATATACTTGACGCCAATAGACATTTTTGTCATGTTCTGTTaatatcaaattttttttatatacatatctaccgtttttttttaaagagaaattgTCTAGATGATGTTATTGCAGTTTAAATGGATGTATTTTAAAACTGTCCTTCACCTTTTTTTGTAATCTTATGGAATACATCTCACCTTGGTGGTGTGTAATGGTTGTTTTTTTTCAACAGTCCCATGGCTATACAGAATGCTGACAAGTTGCATGAATTACCCAGACTACCCTGTAAATAACTGGCCTTTTAAACAATGCTTTAGCTTTGTCCCCTAAAAGACGCCTGTGGTTCCAATGGAAACACTCTTCTTTTCTGGCAGCTATTagttgtttttgttcattttaagtgatttttaaaaaaaaatcttcaatggTGTGGGACACTAcagacat
>TCONS_00035311
tttaGAAGGTTTTTCTAGAGTTTGTTGTGGTTCTTCAGTTTAGTGACTGTcaaatattgtgtgtgttttcagcctTCCCTACAATGAGTTTTTTGGTGGAGTGAGTGGACTTACTGTTGAACAGTTTCTCAAGATCAATGGCTTTCCCAATGCATTCTGGGGCTGGGGAGGAGAGGACGATGACCTCTGGAACAGgGTTCATTATGCAGGCTTCAATGTTACCAGGCCAGAAGGTGATATTGGCAAATACAAATCTATCCCCCATCACCACAGAGGAGAAGTGCAGTTCTTGGGAAGGTACAAGTTGCTGAGGTACTCCAAAGAGCGACAGCATCTGGACGGCTTGAACAATCTGCAGTACTCTCCGGAAATCTCTCTGAGCAACCTGTATAAGAACATCACAGTCAACCTCAATCCTGAGCTCGCCCCCATTGCAGAGTACTGACAGGCTCAGCGTGACCAATCCTTCCCCGCCCCTCGAGTCAGAAAATGTGATGTATCGATGC

Function

symbol description
b4galt6 Enables UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity. Acts upstream of or within glycosphingolipid metabolic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human B4GALT6 (beta-1,4-galactosyltransferase 6).

GO:

id name namespace
GO:0006687 glycosphingolipid metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0008489 UDP-galactose molecular_function

KEGG:

id description
ko00600 Sphingolipid metabolism
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-040426-789 Enables UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity. Acts upstream of or within glycosphingolipid metabolic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human B4GALT6 (beta-1,4-galactosyltransferase 6).

Ensembl:

ensembl_id ENSDARG00000010301

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035309 False 4338 mRNA 0.40 7 6163932 6184167
TCONS_00035310 False 2258 mRNA 0.45 9 6166528 6196989
TCONS_00035311 True 506 lncRNA 0.47 3 6167295 6171995

Neighbor

gene id symbol gene type direction distance location
XLOC_017889 pum2 coding downstream 32108 6089507 ~ 6131824 (-)
XLOC_017888 CABZ01062796.1 coding downstream 128862 6028201 ~ 6035070 (-)
XLOC_017887 CABZ01062797.1 coding downstream 140823 6012451 ~ 6023109 (-)
XLOC_017886 CABZ01064253.1 coding downstream 168229 5995589 ~ 5995703 (-)
XLOC_017885 BX088548.1 coding downstream 549936 5613879 ~ 5613996 (-)
XLOC_017891 NA coding upstream 15857 6212846 ~ 6214757 (-)
XLOC_017892 opn7a coding upstream 44866 6241855 ~ 6278817 (-)
XLOC_017893 trappc8 coding upstream 111575 6308564 ~ 6476705 (-)
XLOC_017894 NA coding upstream 281521 6478510 ~ 6480513 (-)
XLOC_017895 mcm3l coding upstream 319534 6516523 ~ 6532462 (-)
XLOC_017928 CU539064.1 misc upstream 3856416 10053405 ~ 10053701 (-)
XLOC_017882 CABZ01045949.1 non-coding downstream 842603 5321215 ~ 5321329 (-)
XLOC_017896 CT583652.1 non-coding upstream 384810 6581799 ~ 6583670 (-)
XLOC_017902 NA non-coding upstream 941074 7138063 ~ 7139142 (-)
XLOC_017904 NA non-coding upstream 994894 7191883 ~ 7211196 (-)

Expression


Co-expression Network