RNA id: TCONS_00035310


Basic Information

Item Value
RNA id TCONS_00035310
length 2258
RNA type mRNA
GC content 0.45
exon number 9
gene id XLOC_017890
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 6163932 ~ 6196989 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAATGCATCGCGCTGACCGCCCGCCGAGCACGGACGGCGTTTGATGTAGcacgttttattatttatttatttttcgatCTGGAAATTTCTTGACTTTGTTGGGAGAGCGAGCGAGCACTGCGGCCTTGCATCCAGCTGAATGAACGATGCGGACTTTACCAGCAGCCTGATTTAGCACCGCATTTCCCACCCGGATGACCGTTTTCAGCACAGCCAACAGCGTCTCTTTTCTGCGATCTGCGTGTTTTTATGGGAGTGACGGATAGCTAGTAGCCGAGACACAATGTGGAAGTGGAGGCGGCTGATGCGGTTGTCCAACCGCTCCTTAATGGCCTTCATCTTTTTCTTCTCCATGTCCACGACCTGCCTCTACTTTATTTATGTGGCTCCCGGGATAGTCAACACATATTTCTTCATGGTACAGGCTCAGGGTATCATGTTGCGAGACAATGTGCGGACCATTGGTCACATGATCAGACTATACACCAACAAGAACAGTACACTCAACGGCACAGATTATCCAGATGGAAGTAACTCCAGCGAGTATATCGCTCAGCCAACCACATACCTCCCAGAGAACTTCACATATGCTCAGAACCTGCCCTGTCCAGAACGGTTACCTTCTATGAAGGGTCAGATGGATGTCAACATGACAGAGGTTCCTATGGAGGAGATTGAACTGAGACTCAAACATATGGACATTCAATTTGGAGGCCACTGGAAGCCCAAAGATTGCAAACCACGCTGGAAGGTGGCCATATTAATCCCCTTTAGGAATCGCCATGAGCATCTTCCCATTCTATTTCAGCACCTTACTCCAATGCTCCAACGCCAACGCTTGCAGTTTGCCTTTTATGTCATTGAACAGACGGGTACTCAGCCGTTTAACCGTGCCATGCTGTTTAACGTGGGCTTTAAAGAGGCTATGAAAGACCTGGACTGGGACTGTGTGGTGTTTCACGACGTCGATCACATTCCAGAAAACGACCGTAATTACTACGGCTGTGGTCAGATGCCTCGACACTTCGCCGCCAAGCTGGACAAATACATGTACATcctTCCCTACAATGAGTTTTTTGGTGGAGTGAGTGGACTTACTGTTGAACAGTTTCTCAAGATCAATGGCTTTCCCAATGCATTCTGGGGCTGGGGAGGAGAGGACGATGACCTCTGGAACAGgGTTCATTATGCAGGCTTCAATGTTACCAGGCCAGAAGGTGATATTGGCAAATACAAATCTATCCCCCATCACCACAGAGGAGAAGTGCAGTTCTTGGGAAGGTACAAGTTGCTGAGGTACTCCAAAGAGCGACAGCATCTGGACGGCTTGAACAATCTGCAGTACTCTCCGGAAATCTCTCTGAGCAACCTGTATAAGAACATCACAGTCAACCTCAATCCTGAGCTCGCCCCCATTGCAGAGTACTGACAGGCTCAGCGTGACCAATCCTTCCCCGCCCCTCGAGTCAGAAAATGTGATGTATCGATGCCAAACGCCCTTAAAAACAGGAGCAACGAGGGCAAAGGCCTGCCTAATGCACAGTTAATTGCGTGACGtgagtgtgtgcgcgcgtgcggaTCTACTGGATCATATCTGTGAAAGTGTACTAGCGTGACTGCGTCCGTTCAATTGCATGTTTCTCTATGTCCATGCTGGCTTTAGCGAATCCGATcgcaacacataaaaaaaaagaggTGGGGAGTGCCAGCGTCAACGAATCAGATGTTTACTGCGAAGCCTTAATTGAATTTTATAGGCTATCAAACGCTAGATCCAGTCATCTGTGCTTACATTGTAGAAAGCTTGGTTTTACATTGCAACAGCACTATATACTTGACGCCAATAGACATTTTTGTCATGTTCTGTTaatatcaaattttttttatatacatatctaccgtttttttttaaagagaaattgTCTAGATGATGTTATTGCAGTTTAAATGGATGTATTTTAAAACTGTCCTTCACCTTTTTTTGTAATCTTATGGAATACATCTCACCTTGGTGGTGTGTAATGGTTGTTTTTTTTCAACAGTCCCATGGCTATACAGAATGCTGACAAGTTGCATGAATTACCCAGACTACCCTGTAAATAACTGGCCTTTTAAACAATGCTTTAGCTTTGTCCCCTAAAAGACGCCTGTGGTTCCAATGGAAACACTCTTCTTTTCTGGCAGCTATTagttgtttttgttcattttaagtgatttttaaaaaaaaatcttcaatggTGTGGGACACTAcagacat

Function

GO:

id name namespace
GO:0006687 glycosphingolipid metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0008489 UDP-galactose molecular_function

KEGG:

id description
ko00600 Sphingolipid metabolism
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-040426-789 Enables UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity. Acts upstream of or within glycosphingolipid metabolic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human B4GALT6 (beta-1,4-galactosyltransferase 6).

Ensembl:

ensembl_id ENSDART00000013343

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035303 lncRNA downstream 131458 6028201 ~ 6035070 (-) False XLOC_017888
TCONS_00035305 lncRNA downstream 131458 6033785 ~ 6035070 (-) False XLOC_017888
TCONS_00035304 lncRNA downstream 131458 6033785 ~ 6035070 (-) True XLOC_017888
TCONS_00035302 lncRNA downstream 143419 6012451 ~ 6023109 (-) True XLOC_017887
TCONS_00036793 lncRNA downstream 1096338 5068812 ~ 5070190 (-) True XLOC_017876
TCONS_00036794 lncRNA upstream 15857 6212846 ~ 6214757 (-) True XLOC_017891
TCONS_00036447 lncRNA upstream 281521 6478510 ~ 6480513 (-) True XLOC_017894
TCONS_00036448 lncRNA upstream 941074 7138063 ~ 7139142 (-) True XLOC_017902
TCONS_00036795 lncRNA upstream 994894 7191883 ~ 7211196 (-) True XLOC_017904
TCONS_00036796 lncRNA upstream 1415166 7612155 ~ 7638652 (-) False XLOC_017907
TCONS_00035307 mRNA downstream 34704 6089507 ~ 6131824 (-) False XLOC_017889
TCONS_00035306 mRNA downstream 34704 6089507 ~ 6131824 (-) False XLOC_017889
TCONS_00035308 mRNA downstream 34842 6116208 ~ 6131686 (-) True XLOC_017889
TCONS_00035299 mRNA downstream 766133 5378841 ~ 5400395 (-) True XLOC_017884
TCONS_00035298 mRNA downstream 797423 5330540 ~ 5369105 (-) True XLOC_017883
TCONS_00035312 mRNA upstream 44866 6241855 ~ 6278817 (-) True XLOC_017892
TCONS_00035313 mRNA upstream 111575 6308564 ~ 6476705 (-) True XLOC_017893
TCONS_00035314 mRNA upstream 319534 6516523 ~ 6532462 (-) True XLOC_017895
TCONS_00035316 mRNA upstream 611785 6808774 ~ 6812688 (-) False XLOC_017897
TCONS_00035318 mRNA upstream 697897 6894886 ~ 6936488 (-) False XLOC_017898
TCONS_00035301 other downstream 170825 5995589 ~ 5995703 (-) True XLOC_017886
TCONS_00035300 other downstream 552532 5613879 ~ 5613996 (-) True XLOC_017885
TCONS_00035297 other downstream 845199 5321215 ~ 5321329 (-) True XLOC_017882
TCONS_00035291 other downstream 1259051 4906078 ~ 4907477 (-) True XLOC_017875
TCONS_00035282 other downstream 1400042 4753579 ~ 4766486 (-) False XLOC_017871
TCONS_00035315 other upstream 384810 6581799 ~ 6583670 (-) True XLOC_017896
TCONS_00035317 other upstream 612632 6809621 ~ 6812680 (-) True XLOC_017897
TCONS_00035322 other upstream 873651 7070640 ~ 7071611 (-) False XLOC_017900
TCONS_00035333 other upstream 1415293 7612282 ~ 7629271 (-) True XLOC_017907
TCONS_00035337 other upstream 1789961 7986950 ~ 7994084 (-) True XLOC_017910

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000051_01468663_01486168.mRNA True 2394 mRNA 0.47 9 CI01000051 1468419 ~ 1487172 (-)