XLOC_017876


Basic Information

Item Value
gene id XLOC_017876
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 5068812 ~ 5070190 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036793
tgaaactgtttttttattttgttcatatgaTATcttcatattgcacagccctcataaacagtaaaacaaacatgGCTTTTTATTTCTGGTCATCcaaataaagtcttttttttttcacaacttATACGTGAAAATTGTCAAATTATGtacaatgaaaaacaaaaaaaagctttcCCTGAACTACTGAAAAATCCAGTAGTTGGTTTTCGAGGTAGCTGGTTTtcgaggggttttgggtatAAAACAAGAAAATTATTCAACTCAAGTGATGACAGTAGCTAAATACATTTAGAGACCATCCATTTCTATAATCCTTCATCTAGTCAGGCCAGTAACTAAGGGTCCATTTTGGTAGTTGACCAAATGACAGACAACCGAGTACAGTTGATTGACGCTGCCAGTAAGTGAAAGAGGGATTACCGTGCTAAATATCTTGTTCTCCTTCACCCTTCCAATTAGCTGCTCAACATGGAGTCTCAATCTTGCAAGGGACTGCATTTTCCTGACCTCTGACCCAGACATTTGTGCCCTCTTTGACAGGATGCTAGGTACGTGGACTTTGCAGGACACACAGTTTTCAACCAGGAAACCCTCATCCACCATTATTGCCATTTTTGGATTTACAAGAGCCTCGACACCAGAGTGCTTTACAATCTCTGGATCACTGATGGTGCCCTTGTAAAGGGATGAAACGAATGTTACAGCCCCGTGAGGAGCCATCCCAATCAACCCTTTAAAATTCCACTGAGGTTTGTAGGTAGAAAGTAAGTGACTCCGATGAGGGTTTGGTATCTGGCAACGCAGTTCAGCACAGTACAAAATCACCTGGGTGTCAGTGTAATGCTGGAAAACGGCAGGCATGTGAGCTTTGACTGTCTTCTTGTCCAGCCAAATGTCCACAGCTCTGAGGACCATATCCAGAAATGTAGCCCATGTGTTGATGATGCGGCTCACAGCGGATTGGTGGATTCTGAATCTGTGGGCCAAATCCCTCTGCATCAGGCCCAATGATAGGAAGGTCATGAACAGGAAAAACTCATCAATGGGTTGAAGAGACTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036793 True 1059 lncRNA 0.42 2 5068812 5070190

Neighbor

gene id symbol gene type direction distance location
XLOC_017874 arid1b coding downstream 15974 4897996 ~ 5052838 (-)
XLOC_017875 BX649499.1 coding downstream 161335 4906078 ~ 4907477 (-)
XLOC_017873 zdhhc14 coding downstream 185139 4827735 ~ 4883673 (-)
XLOC_017872 galca coding downstream 275362 4769762 ~ 4793450 (-)
XLOC_017871 ak7a coding downstream 302163 4742400 ~ 4766649 (-)
XLOC_017877 ccdc85cb coding upstream 88229 5158419 ~ 5229157 (-)
XLOC_017878 cyp46a1.2 coding upstream 167096 5237286 ~ 5254610 (-)
XLOC_017879 cyp46a1.4 coding upstream 186085 5256275 ~ 5267600 (-)
XLOC_017880 cyp46a1.3 coding upstream 202465 5272655 ~ 5291012 (-)
XLOC_017881 ism2b coding upstream 231996 5302186 ~ 5328637 (-)
XLOC_017928 CU539064.1 misc upstream 4983215 10053405 ~ 10053701 (-)
XLOC_017869 NA non-coding downstream 572670 4495141 ~ 4496142 (-)
XLOC_017867 NA non-coding downstream 682505 4381929 ~ 4386307 (-)
XLOC_017865 NA non-coding downstream 922680 4135534 ~ 4146132 (-)
XLOC_017864 CABZ01042336.1 non-coding downstream 942558 4126140 ~ 4126254 (-)
XLOC_017882 CABZ01045949.1 non-coding upstream 251025 5321215 ~ 5321329 (-)
XLOC_017885 BX088548.1 non-coding upstream 543689 5613879 ~ 5613996 (-)
XLOC_017886 CABZ01064253.1 non-coding upstream 925399 5995589 ~ 5995703 (-)
XLOC_017887 CABZ01062797.1 non-coding upstream 942261 6012451 ~ 6023109 (-)
XLOC_017888 CABZ01062796.1 non-coding upstream 958011 6028201 ~ 6035070 (-)

Expression


Co-expression Network